Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
☆43Oct 23, 2022Updated 3 years ago
Alternatives and similar repositories for DeepDIA
Users that are interested in DeepDIA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated 2 weeks ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- ☆28May 20, 2025Updated 10 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.☆15Sep 19, 2025Updated 6 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Mar 21, 2026Updated 3 weeks ago
- EasyPQP: Simple library generation for OpenSWATH☆11Mar 25, 2026Updated 2 weeks ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Nov 17, 2025Updated 4 months ago
- ☆22Jun 28, 2021Updated 4 years ago
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 6 years ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated this week
- ☆30Mar 23, 2026Updated 2 weeks ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics☆18Oct 11, 2018Updated 7 years ago
- ☆11Apr 10, 2022Updated 4 years ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Mar 28, 2026Updated 2 weeks ago
- R package - MSstats☆96Updated this week
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆186Apr 19, 2024Updated last year
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Deep (Transfer) Learning for Peptide Retention Time Prediction☆54Sep 17, 2021Updated 4 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆19Mar 31, 2026Updated last week
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 2 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Mar 31, 2026Updated last week
- ☆12Mar 26, 2026Updated 2 weeks ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆33Nov 24, 2024Updated last year
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆42Aug 22, 2019Updated 6 years ago
- A Framework for IMS-MS Raw Data Processing written in Rust and Python.☆19Updated this week
- ☆18Aug 9, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 6 months ago
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆68Apr 4, 2026Updated last week
- DLL and SO from Bruker.☆12Feb 25, 2026Updated last month
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆15Dec 6, 2023Updated 2 years ago
- PeakBot - detection of chromatographic and mz profile-mode peaks in LC-HRMS data☆22Feb 9, 2022Updated 4 years ago