lmsac / DeepDIA
Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
☆41Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for DeepDIA
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆76Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆38Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆85Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆56Updated 3 weeks ago
- Deep learning framework for proteomics☆112Updated 2 weeks ago
- Python package for investigating the structural context of PTMs☆27Updated 10 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆34Updated 8 months ago
- A list of tools on proteomics using deep learning☆88Updated 6 months ago
- MS/MS prediction for peptides☆22Updated 3 years ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆32Updated last month
- This is a collection of minimal code to visualize various aspects of proteomics data.☆68Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆77Updated 7 months ago
- Infrastructure of AlphaX ecosystem☆31Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆60Updated this week
- ☆54Updated 6 months ago
- Democratizing ML in proteomics☆28Updated last week
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆19Updated last week
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆80Updated 9 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆107Updated 5 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆45Updated last week
- modular & open DIA search☆55Updated this week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆32Updated 3 weeks ago
- ☆13Updated 8 months ago
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆35Updated 5 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆38Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated last week
- ☆26Updated 3 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆30Updated 6 months ago
- Community-curated tutorials and datasets for ML in proteomics☆47Updated 5 months ago