lmsac / DeepDIALinks
Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
☆42Updated 2 years ago
Alternatives and similar repositories for DeepDIA
Users that are interested in DeepDIA are comparing it to the libraries listed below
Sorting:
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆87Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆66Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- Deep learning framework for proteomics☆128Updated this week
- Democratizing ML in proteomics☆37Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- ☆20Updated 5 months ago
- A list of tools on proteomics using deep learning☆97Updated last year
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆70Updated 2 weeks ago
- Instrument Application Programming Interface☆47Updated 5 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated last week
- Open-source C++ and Python module for opening binary timsTOF data files.☆48Updated last month
- MS/MS prediction for peptides☆23Updated 4 years ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆38Updated 3 weeks ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- modular & open DIA search☆73Updated this week
- Python package for investigating the structural context of PTMs☆28Updated 6 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆28Updated last month
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆51Updated 3 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆59Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 3 months ago
- ☆12Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated 2 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆88Updated 3 weeks ago
- asari, metabolomics data preprocessing☆50Updated this week
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- ☆62Updated last year