Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
☆43Oct 23, 2022Updated 3 years ago
Alternatives and similar repositories for DeepDIA
Users that are interested in DeepDIA are comparing it to the libraries listed below
Sorting:
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.☆14Sep 19, 2025Updated 5 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Jan 20, 2026Updated last month
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics☆18Oct 11, 2018Updated 7 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- ☆22Jun 28, 2021Updated 4 years ago
- ☆11Apr 10, 2022Updated 3 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Feb 17, 2026Updated last week
- ☆28May 20, 2025Updated 9 months ago
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 6 years ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆15Dec 6, 2023Updated 2 years ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Feb 18, 2026Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- DLL and SO from Bruker.☆12Updated this week
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- Spectral library searching using approximate nearest neighbor techniques.☆48Feb 11, 2026Updated 2 weeks ago
- ☆12Jan 29, 2026Updated last month
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Updated this week
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆42Aug 22, 2019Updated 6 years ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Deep (Transfer) Learning for Peptide Retention Time Prediction☆53Sep 17, 2021Updated 4 years ago
- Scoring functions to compare MS/MS spectra☆11Feb 22, 2017Updated 9 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Nov 17, 2025Updated 3 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆185Apr 19, 2024Updated last year
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- ☆18Aug 9, 2019Updated 6 years ago
- Automatically exported from code.google.com/p/mstoolkit☆30Dec 1, 2025Updated 3 months ago
- R package - MSstats☆92Updated this week
- ☆30Oct 2, 2023Updated 2 years ago
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Jan 7, 2026Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 2 weeks ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆53Nov 18, 2021Updated 4 years ago
- PeakBot - detection of chromatographic and mz profile-mode peaks in LC-HRMS data☆22Feb 9, 2022Updated 4 years ago
- ☆21Mar 26, 2025Updated 11 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆68Jan 21, 2026Updated last month