Alternatives and similar repositories for FunFolDesData

Users that are interested in FunFolDesData are comparing it to the libraries listed below

• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 2 months ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 4 years ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 2 years ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• haddocking / binding-affinity-benchmark
  Protein-protein binding affinity benchmark
  ☆15Updated 7 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆23Updated last year
• Furman-Lab / PatchMAN
  ☆26Updated last month
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 4 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 5 years ago
• LPDI-EPFL / RosettaSurf
  ☆15Updated 4 years ago
• matteoferla / Display-of-preset-Rosetta-NCAAs
  What exactly are the non-canonical amino acids in the Rosetta database folder?
  ☆12Updated 5 years ago
• willsheffler / rif
  Rotamer Interaction Field Python Libraries for Computational Protein Design
  ☆11Updated 7 years ago
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• sokrypton / tf_proteins
  some tools for working with protein (PDB) files in tensorflow
  ☆11Updated 6 years ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• Kortemme-Lab / match_ligand_binding_sites
  Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.
  ☆12Updated 4 years ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated last year
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated 2 years ago
• strauchlab / scaffold_design
  ☆18Updated last year
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆27Updated this week
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆24Updated this week
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆21Updated 6 months ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆31Updated last month
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆52Updated 2 weeks ago
• KhondamirRustamov / FoldCraft
  ☆37Updated last month
• ohuelab / ColabDesign-cyclic-binder
  ☆34Updated 2 years ago
• HITS-MBM / conan
  Analysis of contacts in molecular dynamics trajectories
  ☆43Updated 5 years ago