bigbio / quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
☆35Updated this week
Alternatives and similar repositories for quantms:
Users that are interested in quantms are comparing it to the libraries listed below
- A Python interface to proteomics data repositories☆32Updated 9 months ago
- A library for QC report based on MultiQC framework☆14Updated 3 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- ☆56Updated 9 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆21Updated last month
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 4 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆44Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆37Updated 2 weeks ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆23Updated 2 months ago
- Differential Expression Analysis tool box R lang package for omics data☆42Updated last week
- Python package for investigating the structural context of PTMs☆28Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆78Updated 10 months ago
- ☆13Updated 11 months ago
- PDV: an integrative proteomics data viewer☆45Updated last month
- ☆35Updated 3 weeks ago
- Quantitative proteomics workflow☆15Updated 2 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆40Updated 3 weeks ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆24Updated 2 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆42Updated 6 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 9 months ago
- ☆24Updated last year
- ☆28Updated 6 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆28Updated 3 months ago
- ☆25Updated 2 weeks ago
- A python package for fast post translational modification localization, powered by Cython.☆18Updated last year
- Absolute quantification package based on quantms.io☆13Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆42Updated last month