Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
☆81Jun 24, 2026Updated this week
Alternatives and similar repositories for quantms
Users that are interested in quantms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆23Jun 17, 2026Updated last week
- A library for QC report based on MultiQC framework☆32Jun 18, 2026Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41May 6, 2024Updated 2 years ago
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 9 months ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆16May 27, 2026Updated last month
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆111Updated this week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Apr 19, 2026Updated 2 months ago
- SDRF official validator and converts SDRF to pipeline configuration files☆36Jun 8, 2026Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆57Jun 19, 2026Updated last week
- Proteomics search & quantification so fast that it feels like magic☆297Jun 5, 2026Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Jun 19, 2026Updated last week
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆34Nov 24, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆451Jun 18, 2026Updated last week
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated last month
- High quality in silico spectral library generation for data-independent acquisition proteomics☆22Jun 19, 2026Updated last week
- ☆17Jun 17, 2026Updated last week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Updated this week
- R package - MSstats☆98Updated this week
- ☆31Jun 15, 2026Updated 2 weeks ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆110Jun 19, 2026Updated last week
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆55Updated this week
- An open-source Python package to unify raw MS data accession and storage.☆32Jun 2, 2026Updated 3 weeks ago
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).☆10Apr 15, 2026Updated 2 months ago
- ☆38Updated this week
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Jun 11, 2026Updated 2 weeks ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆189Updated this week
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆14Apr 21, 2026Updated 2 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jun 19, 2026Updated last week
- A Python interface to proteomics data repositories☆38Jun 19, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Apr 11, 2026Updated 2 months ago
- Material for the 2017 May Institute☆13Jun 25, 2017Updated 9 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Apr 24, 2026Updated 2 months ago
- Python package for efficient mass spectrometry data processing and visualization☆169Mar 5, 2026Updated 3 months ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆247Updated this week
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago