bigbio / quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
☆34Updated last week
Related projects ⓘ
Alternatives and complementary repositories for quantms
- A library for QC report based on MultiQC framework☆14Updated last week
- A Python interface to proteomics data repositories☆30Updated 6 months ago
- ☆54Updated 6 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆45Updated last week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆21Updated 4 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- Python package for investigating the structural context of PTMs☆27Updated 10 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆33Updated this week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆78Updated last month
- Differential Expression Analysis tool box R lang package for omics data☆40Updated 3 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆31Updated 6 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆42Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆38Updated this week
- ☆32Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆22Updated 5 months ago
- ☆13Updated 8 months ago
- Quantitative proteomics workflow☆15Updated 2 years ago
- PDV: an integrative proteomics data viewer☆44Updated 6 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆77Updated 7 months ago
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- A Comet-based, best practices proteomics pipeline.☆35Updated 8 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆22Updated last month
- A label free quantification tool.☆16Updated 5 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆25Updated this week
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆42Updated 8 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆19Updated last week
- pathway and network analysis for metabolomics☆38Updated 5 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆42Updated 3 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆68Updated 2 years ago