Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
☆75Apr 21, 2026Updated 3 weeks ago
Alternatives and similar repositories for quantms
Users that are interested in quantms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆21May 6, 2026Updated 2 weeks ago
- A library for QC report based on MultiQC framework☆30May 7, 2026Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41May 6, 2024Updated 2 years ago
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 7 months ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15May 30, 2025Updated 11 months ago
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆106Updated this week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆126Apr 19, 2026Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆56May 13, 2026Updated last week
- Proteomics search & quantification so fast that it feels like magic☆289May 8, 2026Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆51Feb 27, 2025Updated last year
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆33Nov 24, 2024Updated last year
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆442Apr 30, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- SDRF official validator and converts SDRF to pipeline configuration files☆32May 11, 2026Updated last week
- High quality in silico spectral library generation for data-independent acquisition proteomics☆22Mar 31, 2026Updated last month
- ☆17Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆154May 11, 2026Updated last week
- R package - MSstats☆97Updated this week
- ☆29May 20, 2025Updated 11 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆110Updated this week
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An open-source Python package to unify raw MS data accession and storage.☆32Apr 13, 2026Updated last month
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).☆10Apr 15, 2026Updated last month
- ☆38May 12, 2026Updated last week
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13May 12, 2026Updated last week
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆186May 7, 2026Updated last week
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆14Apr 21, 2026Updated 3 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated 3 weeks ago
- A Python interface to proteomics data repositories☆37Jun 19, 2025Updated 11 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆65Apr 11, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Apr 24, 2026Updated 3 weeks ago
- Material for the 2017 May Institute☆13Jun 25, 2017Updated 8 years ago
- Python package for efficient mass spectrometry data processing and visualization☆169Mar 5, 2026Updated 2 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆243Mar 7, 2026Updated 2 months ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated last month