Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
☆81Jul 11, 2026Updated last week
Alternatives and similar repositories for quantms
Users that are interested in quantms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- quantms workflow for DIANN tool including DIA and DDA analysis☆17Jun 16, 2026Updated last month
- A library for QC report based on MultiQC framework☆34Updated this week
- SDRF official validator and converts SDRF to pipeline configuration files☆36Jul 11, 2026Updated last week
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆26Updated this week
- Python client for PRIDE Archive Rest API.☆40Jul 2, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆114Updated this week
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 9 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41May 6, 2024Updated 2 years ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated last month
- A Python interface to proteomics data repositories☆38Jun 19, 2025Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Updated this week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆462Jun 30, 2026Updated 3 weeks ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆50Updated this week
- R package - MSstats☆98Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆194Jul 9, 2026Updated last week
- ☆16May 27, 2026Updated last month
- Documentation is available here:☆26Jun 10, 2026Updated last month
- An open-source Python package to unify raw MS data accession and storage.☆33Jun 30, 2026Updated 3 weeks ago
- ☆42Jul 14, 2026Updated last week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆249Jul 8, 2026Updated 2 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rescoring and spectral library generation pipeline for proteomics.☆57Updated this week
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Jul 13, 2026Updated last week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Jul 14, 2026Updated last week
- Democratizing ML in proteomics☆57Updated this week
- Spectral library searching using approximate nearest neighbor techniques.☆50Feb 11, 2026Updated 5 months ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- ☆72May 7, 2024Updated 2 years ago
- ☆23Jun 11, 2026Updated last month
- ☆45Jan 20, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆34Jul 3, 2026Updated 2 weeks ago
- A cross-platform proteomics data analysis suite☆311Updated this week
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated last month
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 3 months ago
- This is a R package for alignment of DIA mass-spec data☆12Jan 31, 2026Updated 5 months ago
- A list of tools on proteomics using deep learning☆109May 14, 2026Updated 2 months ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆16Jul 15, 2026Updated last week