Proteomics Mass Spectrometry Datasets for Machine Learning
☆23Aug 16, 2024Updated 2 years ago
Alternatives and similar repositories for PROSPECT
Users that are interested in PROSPECT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python framework for Deep Learning in Proteomics☆42Oct 7, 2026Updated 3 weeks ago
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Updated this week
- Democratizing ML in proteomics☆58Updated this week
- An open-source Python package to unify raw MS data accession and storage.☆36Aug 31, 2026Updated last month
- ☆23Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆32Jul 16, 2026Updated 3 months ago
- A list of tools on proteomics using deep learning☆111May 14, 2026Updated 5 months ago
- Community-curated tutorials and datasets for ML in proteomics☆61Oct 31, 2025Updated 11 months ago
- Helps you convert raw mass spec data into tensors!☆10Nov 22, 2024Updated last year
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 3 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆62Updated this week
- ☆17Oct 1, 2024Updated 2 years ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Sep 28, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆43Updated this week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆59Oct 23, 2026Updated last week
- High-performance Rust + Python readers for mass spectrometry / proteomics raw data.☆15Updated this week
- ☆13Oct 14, 2026Updated 2 weeks ago
- Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.☆27May 21, 2019Updated 7 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆51Jul 13, 2026Updated 3 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆87Jan 6, 2022Updated 4 years ago
- Proteomics search & quantification so fast that it feels like magic☆317Oct 22, 2026Updated last week
- EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry☆11Nov 8, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Feb 27, 2025Updated last year
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆39Mar 3, 2026Updated 7 months ago
- InstaNovo-FM: a self-supervised foundation model for proteomics☆14Oct 23, 2026Updated last week
- A comprehensive tutorial for proteomics data analysis in R that utilizes packages developed by researchers at PNNL and from Bioconductor.☆12May 28, 2022Updated 4 years ago
- An open-source prediction framework for peptide ion collision cross section (CCS) values with python.☆16Oct 6, 2023Updated 3 years ago
- Confidence control and FDR estimation for de novo peptide sequencing☆12Oct 23, 2026Updated last week
- This is the public roadmap for the custom-built AWS CDK Landing Zone solution provided by Towards the Cloud.☆12Aug 1, 2026Updated 2 months ago
- Python package for efficient mass spectrometry data processing and visualization☆169Aug 18, 2026Updated 2 months ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆41Jun 10, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Streamlining Mass Spectrometry Data Visualization with Pandas☆26Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆135Updated this week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Mar 26, 2026Updated 7 months ago
- ☆74May 7, 2024Updated 2 years ago
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.☆21Updated this week
- ☆10Mar 31, 2023Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago