Alternatives and similar repositories for PROSPECT

Users that are interested in PROSPECT are comparing it to the libraries listed below

• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆85Updated 3 weeks ago
• jingbo02 / Awesome-Denovo-Peptide-Sequencing
  Paper collection about de novo peptide Sequening
  ☆19Updated 9 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆48Updated 2 weeks ago
• gagneurlab / spectralis
  ☆14Updated last year
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆136Updated last week
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆70Updated 2 months ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated 8 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last month
• pFindStudio / pGlyco3
  ☆20Updated 9 months ago
• Noble-Lab / casanovo
  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
  ☆166Updated last week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆52Updated last month
• instadeepai / InstaNovo
  De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
  ☆103Updated last month
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆33Updated 2 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆57Updated last year
• HUPO-PSI / ProForma
  HUPO-PSI Standardized peptidoform notation
  ☆21Updated 2 weeks ago
• ml4bio / USPNet
  Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
  ☆35Updated 2 weeks ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• idptools / parrot
  Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…
  ☆20Updated 3 months ago
• AmadeusloveIris / GraphNovo
  ☆15Updated 2 years ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆99Updated 3 months ago
• Exscientia / abodybuilder3
  ☆71Updated last year
• robpearc / DeepFoldRNA
  ☆37Updated last year
• PDB-REDO / AlphaBridge
  ☆46Updated 3 weeks ago
• MannLabs / alphadia
  modular & open DIA search
  ☆91Updated last week
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆60Updated 3 weeks ago
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆58Updated 3 months ago
• aqlaboratory / rgn2
  ☆109Updated 2 years ago
• BioSystemsUM / propythia
  Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical pro…
  ☆33Updated 2 years ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆74Updated 2 years ago