wilhelm-lab / PROSPECTLinks
Proteomics Mass Spectrometry Datasets for Machine Learning
☆19Updated last year
Alternatives and similar repositories for PROSPECT
Users that are interested in PROSPECT are comparing it to the libraries listed below
Sorting:
- A deep learning toolkit for mass spectrometry☆82Updated last year
- Paper collection about de novo peptide Sequening☆19Updated 7 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆98Updated 2 weeks ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated 3 weeks ago
- ☆14Updated 11 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆154Updated this week
- Deep learning framework for proteomics☆131Updated 2 weeks ago
- Democratizing ML in proteomics☆43Updated last month
- modular & open DIA search☆75Updated this week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- ☆20Updated 7 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆48Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 6 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆73Updated 2 weeks ago
- ☆36Updated last month
- a python package for molecular formula analysis in MS-based small molecule studies☆31Updated 2 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆67Updated 2 years ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆31Updated 2 years ago
- Predict the structure of immune receptor proteins☆53Updated 10 months ago
- Protein language model trained on coding DNA☆49Updated 11 months ago
- ☆93Updated 3 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated last month
- A list of tools on proteomics using deep learning☆105Updated last year
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated 3 weeks ago
- HUPO-PSI Standardized peptidoform notation☆21Updated this week
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆103Updated last week
- A machine learning based protein disorder predictor.☆25Updated 3 weeks ago
- ☆26Updated 9 months ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆20Updated last month
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆22Updated 4 months ago