wilhelm-lab / PROSPECTLinks
Proteomics Mass Spectrometry Datasets for Machine Learning
☆16Updated 9 months ago
Alternatives and similar repositories for PROSPECT
Users that are interested in PROSPECT are comparing it to the libraries listed below
Sorting:
- ☆14Updated 8 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated 2 months ago
- A deep learning toolkit for mass spectrometry☆77Updated 10 months ago
- Democratizing ML in proteomics☆37Updated 2 weeks ago
- Paper collection about de novo peptide Sequening☆16Updated 4 months ago
- ☆20Updated 3 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆64Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 2 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆27Updated last month
- modular & open DIA search☆71Updated this week
- Deep learning framework for proteomics☆127Updated last week
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆40Updated last year
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆142Updated 2 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆44Updated 3 months ago
- Python package for investigating the structural context of PTMs☆28Updated 4 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 2 months ago
- An open-source Python package to unify raw MS data accession and storage.☆24Updated last month
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆11Updated 3 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆86Updated last year
- Python framework for Deep Learning in Proteomics☆27Updated last month
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆84Updated 2 weeks ago
- A list of tools on proteomics using deep learning☆96Updated last year
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆25Updated last year
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Updated 2 years ago
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆25Updated 7 months ago
- ☆14Updated last year
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆128Updated 3 weeks ago
- MS/MS prediction for peptides☆22Updated 4 years ago