wilhelm-lab / PROSPECTLinks
Proteomics Mass Spectrometry Datasets for Machine Learning
☆18Updated 11 months ago
Alternatives and similar repositories for PROSPECT
Users that are interested in PROSPECT are comparing it to the libraries listed below
Sorting:
- Paper collection about de novo peptide Sequening☆17Updated 5 months ago
- A deep learning toolkit for mass spectrometry☆81Updated 11 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆91Updated last month
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆146Updated last week
- ☆14Updated 9 months ago
- Deep learning framework for proteomics☆128Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆28Updated last month
- Predict the structure of immune receptor proteins☆52Updated 8 months ago
- ☆20Updated 5 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆66Updated last month
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated last month
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆19Updated 5 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- Protein language model trained on coding DNA☆47Updated 8 months ago
- ☆34Updated last month
- modular & open DIA search☆73Updated this week
- Fast deep learning methods for large-scale protein-protein interaction screening☆46Updated 2 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆64Updated last year
- ☆58Updated 8 months ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆67Updated last year
- Tools for annotation, processing and ML for antibody sequences☆31Updated last week
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆31Updated 2 months ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆22Updated 7 months ago
- ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.☆52Updated 4 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆100Updated last week
- Contrastive learning harmonizing protein language models and natural language models☆32Updated last year
- Efficient implementatin of ESM family.☆58Updated 5 months ago
- Democratizing ML in proteomics☆37Updated 3 weeks ago
- ☆69Updated 2 months ago