wilhelm-lab / PROSPECT
Proteomics Mass Spectrometry Datasets for Machine Learning
☆13Updated 6 months ago
Alternatives and similar repositories for PROSPECT:
Users that are interested in PROSPECT are comparing it to the libraries listed below
- ☆13Updated 4 months ago
- modular & open DIA search☆61Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated 2 weeks ago
- Democratizing ML in proteomics☆34Updated last week
- A deep learning toolkit for mass spectrometry☆70Updated 6 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆26Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- ☆17Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆41Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆49Updated 2 months ago
- A python package for fast post translational modification localization, powered by Cython.☆18Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆79Updated this week
- Matthew The's implementation of MaRaCluster☆11Updated 2 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆37Updated 2 weeks ago
- Python package for investigating the structural context of PTMs☆28Updated last month
- Deep learning framework for proteomics☆116Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆38Updated 11 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆122Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆64Updated 3 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆84Updated 2 months ago
- Instrument Application Programming Interface☆45Updated last week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆54Updated this week
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆28Updated last year
- ☆13Updated 11 months ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆19Updated last month
- The Multiplierz Proteomics Library☆24Updated 9 months ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆19Updated 3 months ago
- ☆35Updated 3 weeks ago