marbl / VALETLinks
A pipeline for detecting mis-assemblies in metagenomic assemblies.
☆14Updated 7 years ago
Alternatives and similar repositories for VALET
Users that are interested in VALET are comparing it to the libraries listed below
Sorting:
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 3 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- k-mer counting software☆39Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- Split k-mer analysis – version 2☆87Updated 2 weeks ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- ☆26Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- ☆31Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆66Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- ☆53Updated 4 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago