A pipeline for detecting mis-assemblies in metagenomic assemblies.
☆14Nov 3, 2017Updated 8 years ago
Alternatives and similar repositories for VALET
Users that are interested in VALET are comparing it to the libraries listed below
Sorting:
- Visualization tool for (meta)genome assembly graphs☆25Updated this week
- Partitioning and analysis methods for large, complex sequence datasets☆38Oct 17, 2018Updated 7 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms☆10Nov 30, 2014Updated 11 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 8 years ago
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Sep 17, 2024Updated last year
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 8 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆42Aug 13, 2025Updated 6 months ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 4 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16May 29, 2024Updated last year
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆18Oct 3, 2016Updated 9 years ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Feb 26, 2022Updated 4 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- simple and not slow ORF caller☆21Nov 6, 2025Updated 3 months ago
- Library for indexing VCF files for random access searches by rsID☆17Feb 2, 2026Updated 3 weeks ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- COCACOLA: a general framework for binning contigs in metagenomic studies incorporating read COverage, CorrelAtion, sequence COmposition a…☆17Mar 12, 2017Updated 8 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- 1000 Genomes Project Metadata R Package☆20Oct 27, 2025Updated 4 months ago
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 6 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 3 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated last year
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Apr 10, 2019Updated 6 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- ☆25Feb 2, 2021Updated 5 years ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆121Jan 20, 2026Updated last month
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 8 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32May 1, 2025Updated 9 months ago