marbl / VALET
A pipeline for detecting mis-assemblies in metagenomic assemblies.
☆14Updated 7 years ago
Alternatives and similar repositories for VALET:
Users that are interested in VALET are comparing it to the libraries listed below
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Colinear block visualisation tool☆30Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 9 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆18Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆48Updated 6 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 8 months ago
- genomic alignment similarity search tool☆19Updated 7 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 11 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 2 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Predict MLST directly from uncorrected long reads☆26Updated 2 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆42Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Recombination-free trees☆56Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- Detect contigs of complete circular genomes☆22Updated 5 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago