HadrienG / taxadbLinks
locally query the ncbi taxonomy
☆40Updated 2 years ago
Alternatives and similar repositories for taxadb
Users that are interested in taxadb are comparing it to the libraries listed below
Sorting:
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- MGnify API toolkit☆20Updated 5 months ago
- PaperBLAST: find papers about a protein or its homologs☆40Updated last week
- ☆31Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 5 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆33Updated last year
- A package to annotate protein sequences☆59Updated 4 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated 2 years ago
- tree visualization for tree + annotation data☆39Updated last month
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- ☆29Updated last year
- ☆23Updated 5 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 2 months ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Benchmark datasets for WGS analysis☆39Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago
- StrainFinder☆27Updated 7 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- A curated database of completed assemblies with taxonomy IDs☆45Updated 6 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆40Updated last month
- ☆43Updated last year