HadrienG / taxadbLinks
locally query the ncbi taxonomy
☆39Updated 3 years ago
Alternatives and similar repositories for taxadb
Users that are interested in taxadb are comparing it to the libraries listed below
Sorting:
- Python bindings for the TaxonKit library☆43Updated 2 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 5 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- ☆25Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated 2 months ago
- MGnify API toolkit☆19Updated last year
- ☆31Updated 4 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆51Updated 3 years ago
- Find common blocks and differences between DNA sequences☆42Updated 2 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- http://www.combio.pl/alfree☆23Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Updated this week
- Visualization of the pan-genome output by panX☆66Updated 7 months ago
- PaperBLAST: find papers about a protein or its homologs☆50Updated last week
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆64Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆59Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- fast sequence evolution simulation for SARS-CoV-2 and similar☆23Updated 9 months ago
- Predicting biosynthetic gene clusters in genomes☆42Updated 12 years ago
- ☆23Updated 6 years ago
- A package to annotate protein sequences☆60Updated 11 months ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28Updated 8 months ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Updated 7 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Updated 2 months ago