a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser
☆15Dec 5, 2025Updated 5 months ago
Alternatives and similar repositories for krakenSankey
Users that are interested in krakenSankey are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- D3 Sankey Network Graphs from R☆71Feb 27, 2026Updated 2 months ago
- Visualization tool for (meta)genome assembly graphs☆47Apr 29, 2026Updated last week
- TAXnomic Profile Aggregation and STAndardisation☆43Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Aug 31, 2018Updated 7 years ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 7 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆16Jan 25, 2020Updated 6 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- Statistical analysis for sparse high-throughput sequencing☆72Dec 17, 2024Updated last year
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 3 years ago
- A quality control tool for FASTQ files written in rust☆54Jun 14, 2025Updated 10 months ago
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated last year
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Jan 23, 2020Updated 6 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆48Apr 20, 2026Updated 2 weeks ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 4 years ago
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆14Apr 30, 2026Updated last week
- ☆24Apr 17, 2025Updated last year
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆66May 11, 2020Updated 5 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 2 years ago
- ☆15Jun 27, 2024Updated last year
- wrapper functions to use ggstatsplot functions as a module in jamovi☆10Mar 8, 2026Updated 2 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated 10 months ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago