mgijax / mgvLinks
Multiple Genome Viewer
☆12Updated 2 weeks ago
Alternatives and similar repositories for mgv
Users that are interested in mgv are comparing it to the libraries listed below
Sorting:
- Multiple sequence alignment browser☆11Updated 2 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆24Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Rapid and accurate ancestry inference using SNVs.☆26Updated last month
- ☆22Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 3 weeks ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆19Updated 7 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- NGS duplicate marking☆19Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆25Updated 2 weeks ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- ☆12Updated 3 weeks ago
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Updated 2 years ago
- A python package for showing JBrowse views☆26Updated last year
- GBWT-based handle graph☆31Updated last week
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆21Updated 6 years ago
- BED QC tool (in the making)☆16Updated 3 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Updated 3 weeks ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 7 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 4 months ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆12Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago