Variant Call Format (VCF) parser
☆26Mar 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for vcf-js
Users that are interested in vcf-js are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆12Mar 31, 2026Updated 2 weeks ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Mar 28, 2026Updated 2 weeks ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- ☆24Apr 1, 2026Updated last week
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 3 weeks ago
- CWL experimental grammar☆11Nov 16, 2025Updated 4 months ago
- CWL for GDC DNASeq workflows☆23Mar 30, 2026Updated 2 weeks ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 2 weeks ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆37Oct 14, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated 3 weeks ago
- Software for creating and comparing genome fingerprints.☆11Jun 30, 2024Updated last year
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆39Feb 15, 2025Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.☆27Mar 22, 2026Updated 3 weeks ago