Variant Call Format (VCF) parser
☆26Jan 21, 2026Updated last month
Alternatives and similar repositories for vcf-js
Users that are interested in vcf-js are comparing it to the libraries listed below
Sorting:
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- ☆23Feb 16, 2026Updated 2 weeks ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 2 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Feb 14, 2026Updated 2 weeks ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 4 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Updated this week
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 2 years ago
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Structural variant (SV) analysis tools☆40Jul 1, 2024Updated last year
- Visualization tool for (meta)genome assembly graphs☆25Feb 26, 2026Updated last week
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- Software for creating and comparing genome fingerprints.☆11Jun 30, 2024Updated last year
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year