lskatz / adapterseqsLinks
A repo with just adapter sequences
☆15Updated last month
Alternatives and similar repositories for adapterseqs
Users that are interested in adapterseqs are comparing it to the libraries listed below
Sorting:
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆41Updated last week
- Remove human reads from a sequencing run☆40Updated last month
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 weeks ago
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- µbinfie blog☆18Updated last month
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Genome size estimation from long read overlaps☆59Updated this week
- interactive barplot for amplicon sequencing☆14Updated 8 months ago
- Read contamination removal☆25Updated last year
- Bacterial Operon Finder for Functional Organization☆15Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆19Updated 8 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 7 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆12Updated last month
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆18Updated 5 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Updated 2 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 4 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆16Updated 10 months ago
- Generate basic stats for an assembly.☆13Updated 2 years ago
- sunburst plots for taxonomy - working to update Krona☆40Updated 2 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆59Updated last month
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆20Updated last year