pmenzel / taxonomy-toolsLinks
C++ tools for NCBI taxonomy tasks
☆11Updated 3 years ago
Alternatives and similar repositories for taxonomy-tools
Users that are interested in taxonomy-tools are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- De novo VIral Genome Annotator☆21Updated 9 months ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- ☆22Updated 2 years ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 10 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Northern Arizona SNP Pipeline☆19Updated 7 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 6 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 3 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Updated 4 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated last year
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 10 months ago
- Identifying ViRal and Circular content in metAgenomes☆14Updated 6 years ago
- Read contamination removal☆25Updated last year
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- ☆17Updated last year
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆10Updated 4 years ago