pmenzel / taxonomy-toolsLinks
C++ tools for NCBI taxonomy tasks
☆11Updated 2 months ago
Alternatives and similar repositories for taxonomy-tools
Users that are interested in taxonomy-tools are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- De novo VIral Genome Annotator☆23Updated 11 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 8 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Read contamination removal☆25Updated last year
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 6 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Updated 6 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Updated 5 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- ☆22Updated 2 years ago
- Northern Arizona SNP Pipeline☆19Updated 10 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Neptune: Genomic Signature Discovery☆20Updated 9 months ago
- Remove human reads from a sequencing run☆40Updated last month
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- frame-shift correction for long-read (meta)genomics☆34Updated last year