pmenzel / taxonomy-tools
C++ tools for NCBI taxonomy tasks
☆11Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for taxonomy-tools
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆13Updated last year
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 2 months ago
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆14Updated 2 years ago
- Northern Arizona SNP Pipeline☆19Updated 3 weeks ago
- De novo VIral Genome Annotator☆21Updated 2 months ago
- ☆21Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 5 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated last month
- ☆19Updated 11 months ago
- Strain-level taxonomic classification of metagenomic data using pangenome graphs☆14Updated this week
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 5 months ago
- ☆17Updated 5 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 4 months ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- metagenome population recombination rate estimation pipeline☆12Updated 3 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 5 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆22Updated last month
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago