pmenzel / taxonomy-toolsLinks
C++ tools for NCBI taxonomy tasks
☆11Updated 4 months ago
Alternatives and similar repositories for taxonomy-tools
Users that are interested in taxonomy-tools are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- De novo VIral Genome Annotator☆23Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- Read contamination removal☆25Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 10 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 8 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Dadaist2 🟨 Highway to R☆13Updated 7 months ago
- software to identify primers that can distinguish genomes☆20Updated 9 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Neptune: Genomic Signature Discovery☆20Updated 11 months ago
- Identifying ViRal and Circular content in metAgenomes☆14Updated 6 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Raspir, the rare species identifier☆11Updated 2 years ago
- ☆16Updated 2 years ago
- Northern Arizona SNP Pipeline☆20Updated last year
- ☆14Updated 4 years ago