C++ tools for NCBI taxonomy tasks
☆12Jun 26, 2025Updated last year
Alternatives and similar repositories for taxonomy-tools
Users that are interested in taxonomy-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 5 months ago
- ☆18Apr 6, 2022Updated 4 years ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆55Jul 24, 2025Updated 11 months ago
- Maximum Likelihood Amplicon Pipeline☆22Jul 16, 2026Updated last week
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Dec 1, 2025Updated 7 months ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 7 years ago
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 10 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated 3 weeks ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)