nf-core / createtaxdbLinks
Parallelised and automated construction of metagenomic classifier databases of different tools
☆13Updated last week
Alternatives and similar repositories for createtaxdb
Users that are interested in createtaxdb are comparing it to the libraries listed below
Sorting:
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Bacterial GWAS analysis☆40Updated last month
- Recombination-free trees☆58Updated 3 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆46Updated 3 months ago
- Calculate assocations between genes and traits☆23Updated 3 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 7 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- A listing of software, tools and databases useful for virome analysis☆36Updated this week
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- A script for comparing old vs new versions of genome annotations☆21Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 11 months ago
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆13Updated last month
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆47Updated 6 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆21Updated 11 months ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 months ago