nf-core / createtaxdbLinks
Parallelised and automated construction of metagenomic classifier databases of different tools
☆15Updated last week
Alternatives and similar repositories for createtaxdb
Users that are interested in createtaxdb are comparing it to the libraries listed below
Sorting:
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last month
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆60Updated 2 weeks ago
- Remove human reads from a sequencing run☆40Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Influenza genome analysis Nextflow workflow☆23Updated 3 weeks ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆29Updated 3 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆62Updated 3 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- ☆14Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ☆26Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Recombination-free trees☆60Updated last month
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Intra-species bacterial contamination detection☆25Updated 7 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago
- Surveillance of pathogens using population genomics and sequencing☆43Updated 3 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago