microbinfie-hackathon2020 / CSISLinks
Code Safety Inspection Service
☆20Updated 3 years ago
Alternatives and similar repositories for CSIS
Users that are interested in CSIS are comparing it to the libraries listed below
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- Recombination-free trees☆62Updated 3 months ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- whole genome MLST analysis☆50Updated 6 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last week
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- Gene Absence Presence Identification tool.☆27Updated 8 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- Split Kmer Analysis☆65Updated 3 years ago
- Bacterial GWAS analysis☆46Updated last month
- Bacterial surveillance pipeline.☆26Updated 2 months ago
- Plasmid exploration of bacterial genomes☆22Updated 3 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 7 months ago
- ASMNGS20 - 2020 Conference Details☆15Updated 3 years ago
- SeqSero2☆39Updated 2 months ago
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- Reorients assembled microbial sequences☆130Updated 3 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated last week
- Order and orientation of complete bacterial genomes☆29Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated this week
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- Precise host read removal☆110Updated 3 months ago