dsarov / ARDaPLinks
Comprehensive resistance detection from WGS data
☆19Updated this week
Alternatives and similar repositories for ARDaP
Users that are interested in ARDaP are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆37Updated 2 months ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated 2 weeks ago
- Recombination-free trees☆59Updated 5 months ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- ☆36Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 6 months ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Order and orientation of complete bacterial genomes☆28Updated last month
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 10 months ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆18Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆27Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated 2 months ago
- Gene-flank analysis tool☆29Updated 8 months ago
- A taxonomic classifier of plasmids☆27Updated 4 years ago
- ☆52Updated 3 months ago
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last year