Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/btab161
☆20Jul 19, 2024Updated last year
Alternatives and similar repositories for Hummingbird
Users that are interested in Hummingbird are comparing it to the libraries listed below
Sorting:
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- ☆13Apr 5, 2024Updated last year
- Central repository for the VICC metakb web application☆15Updated this week
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- Biological Sequence Substitution Models for Julia☆17Apr 23, 2023Updated 2 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Jun 27, 2025Updated 8 months ago
- Julia interface to APIs for various bio-related web services☆22Feb 9, 2023Updated 3 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- A proof of concept daisy-chaining Nextflow workflows☆30Aug 22, 2025Updated 6 months ago
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- Parse and process SAM and BAM formatted files☆29Apr 26, 2025Updated 10 months ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28Aug 21, 2025Updated 6 months ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- Efficient types and methods for K-mer biosequences☆31Jan 5, 2026Updated 2 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Jul 5, 2022Updated 3 years ago
- ☆30Oct 4, 2024Updated last year
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- Algorithm to detect germline and de novo transposon insertions☆31Aug 14, 2025Updated 6 months ago
- ☆27Dec 22, 2025Updated 2 months ago
- Fast, flexible zlib bindings.☆27Dec 11, 2019Updated 6 years ago
- Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆11Sep 30, 2024Updated last year
- software package for integrative genetic association analysis☆35Jul 8, 2023Updated 2 years ago
- Tools for genomic features in Julia.☆35Oct 1, 2024Updated last year
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 5 years ago
- Core types and interfaces for BioJulia packages☆33Oct 18, 2018Updated 7 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- ☆10May 31, 2022Updated 3 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- MemVerge Netflow Plugin☆16Jun 24, 2025Updated 8 months ago
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- Code for nanopore paper☆33Jun 26, 2015Updated 10 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- Codebase for WHO estimates of excess mortality associated with the COVID-19 pandemic☆12Feb 25, 2023Updated 3 years ago
- ☆10Jun 29, 2021Updated 4 years ago
- A python wrapper for interacting with the LabArchives API.☆10Aug 10, 2022Updated 3 years ago