Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/btab161
☆20Jul 19, 2024Updated last year
Alternatives and similar repositories for Hummingbird
Users that are interested in Hummingbird are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A proof of concept daisy-chaining Nextflow workflows☆31Mar 10, 2026Updated last month
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 2 years ago
- MemVerge Netflow Plugin☆16Jun 24, 2025Updated 10 months ago
- ☆12Apr 7, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Apr 5, 2024Updated 2 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12Sep 18, 2025Updated 7 months ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- ☆16May 22, 2023Updated 2 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Jun 27, 2025Updated 10 months ago
- Partial reimplementation of bcftools for VCF Zarr☆24Updated this week
- An awesome tool to visualize snakemake rule graphs☆32Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆19Updated this week
- ☆19Mar 29, 2023Updated 3 years ago
- Algorithm to detect germline and de novo transposon insertions☆34Aug 14, 2025Updated 8 months ago
- ☆10Dec 17, 2025Updated 4 months ago
- A post-mapping authentication toolkit for ancient metagenomics☆20Mar 30, 2026Updated last month
- Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆12Sep 30, 2024Updated last year
- ☆15Apr 22, 2022Updated 4 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fraser Lab website☆40Apr 28, 2026Updated last week
- Nextflow runs monitoring and organisation UI☆77Sep 20, 2024Updated last year
- ☆11Mar 2, 2021Updated 5 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago
- ☆30Oct 4, 2024Updated last year
- Emacs major mode for Nextflow☆25Jan 11, 2025Updated last year
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Jan 20, 2026Updated 3 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- Julia interface to APIs for various bio-related web services☆22Feb 9, 2023Updated 3 years ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- Code for nanopore paper☆33Jun 26, 2015Updated 10 years ago
- Code repository for the HAYSTAC pipeline☆15Oct 25, 2024Updated last year
- Accelerated Bayesian inference of population size history from whole genome data.☆35Apr 6, 2026Updated 3 weeks ago