Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/btab161
☆20Jul 19, 2024Updated 2 years ago
Alternatives and similar repositories for Hummingbird
Users that are interested in Hummingbird are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated 2 years ago
- ☆13Apr 7, 2026Updated 4 months ago
- MemVerge Netflow Plugin☆16Jun 24, 2025Updated last year
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 3 years ago
- nf-test utility functions☆13Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12May 12, 2026Updated 3 months ago
- 1-Click Cluster Deployment with AWS ParallelCluster☆30Sep 23, 2022Updated 3 years ago
- Minimal Viable Identifier☆14Jan 21, 2022Updated 4 years ago
- A proof of concept daisy-chaining Nextflow workflows☆34Mar 10, 2026Updated 5 months ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆13Sep 30, 2024Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Jun 27, 2025Updated last year
- SvelteJS + fastapi + docker-compose (with mongodb and material ui support)☆17Jan 26, 2026Updated 6 months ago
- Galaxy on AWS Guidance provides all the infrastructure components required to run Galaxy in the cloud and are preconfigured with industry…☆19Feb 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Algorithm to detect germline and de novo transposon insertions☆38Jun 26, 2026Updated last month
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- A REST client for Orthanc DICOM servers☆19Dec 17, 2023Updated 2 years ago
- Generate a random string to use in your CloudFormation templates☆14Dec 29, 2016Updated 9 years ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 9 years ago
- ☆11Dec 17, 2025Updated 7 months ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 10 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- marimo + pixi starter template☆19Aug 8, 2026Updated last week
- Fraser Lab website☆40Updated this week
- ☆19Mar 29, 2023Updated 3 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated 11 months ago
- gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling☆15Nov 6, 2025Updated 9 months ago
- ☆27Oct 25, 2023Updated 2 years ago
- CSI driver for CernVM-FS☆26Feb 11, 2026Updated 6 months ago
- De-identify medical images with the help of Amazon Comprehend Medical and Rekognition.☆25Dec 10, 2020Updated 5 years ago
- Nextflow runs monitoring and organisation UI☆77Sep 20, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Mar 2, 2021Updated 5 years ago
- Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, R…☆17Jul 2, 2026Updated last month
- A python wrapper for interacting with the LabArchives API.☆10Aug 10, 2022Updated 4 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Biological Sequence Substitution Models for Julia☆17Apr 23, 2023Updated 3 years ago
- Simple WebSockets API☆10Nov 18, 2021Updated 4 years ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago