quwubin / paired-kmers
finding conserved regions in highly diverse genomes
☆16Updated 6 months ago
Alternatives and similar repositories for paired-kmers:
Users that are interested in paired-kmers are comparing it to the libraries listed below
- Find Unique genomic Regions☆29Updated last month
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 weeks ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- strain-level analysis tools☆34Updated 4 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆13Updated 6 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last week
- software to identify primers that can distinguish genomes☆21Updated last month
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 8 months ago
- Generate unique KMERs for every contig in a FASTA file☆47Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆20Updated 8 months ago
- Strain-level taxonomic classification of metagenomic data using pangenome graphs☆23Updated 3 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 5 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆12Updated 2 months ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 4 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆29Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 6 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 10 months ago