finding conserved regions in highly diverse genomes
☆16Jun 1, 2025Updated 9 months ago
Alternatives and similar repositories for paired-kmers
Users that are interested in paired-kmers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated 2 months ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated last month
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Nov 19, 2025Updated 4 months ago
- PCR Primer Quality Control☆71Sep 29, 2025Updated 6 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Feb 14, 2023Updated 3 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Nov 7, 2023Updated 2 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆33May 23, 2024Updated last year
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 7 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 2 months ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 4 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 8 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Mar 23, 2026Updated last week
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- Repo for PrimerSchemes☆17Feb 24, 2026Updated last month
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 2 years ago
- Mutation tracker for microbial genomes☆14Sep 30, 2020Updated 5 years ago
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 8 months ago
- ☆11Jun 29, 2023Updated 2 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 8 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Feb 18, 2026Updated last month
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆58Aug 6, 2023Updated 2 years ago
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated 7 months ago
- genome sized sequences clustering☆17Dec 29, 2020Updated 5 years ago
- ☆30Mar 6, 2025Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆22Aug 1, 2025Updated 7 months ago
- 🧬 Unique (& conserved) DNA sequence identification☆17Mar 10, 2026Updated 2 weeks ago
- Overlapped primer design for entire coding sequence of the gene with specificity check☆13Feb 22, 2022Updated 4 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 4 months ago
- GWAS analysis process based on EMMAX software☆18Dec 12, 2023Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated last year