quwubin / paired-kmersLinks
finding conserved regions in highly diverse genomes
☆15Updated 3 weeks ago
Alternatives and similar repositories for paired-kmers
Users that are interested in paired-kmers are comparing it to the libraries listed below
Sorting:
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- ☆28Updated 3 years ago
- Find Unique genomic Regions☆30Updated 2 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 4 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- transposable element typing pipeline☆18Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆28Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated this week
- Convert genbank files to a swath of other formats☆18Updated last year
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- ☆32Updated 2 years ago
- ☆42Updated 3 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆15Updated 3 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- ☆20Updated last year
- Genomewide Epistasis Analysis on Bacteria☆14Updated last month
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated last month
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- A script for comparing old vs new versions of genome annotations☆21Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago