MonashBioinformaticsPlatform / celaref
☆14Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for celaref
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 4 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆16Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆17Updated last month
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated 5 months ago
- Bead-based single-cell atac processing☆31Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Pairwise Hierarchical Model☆13Updated 2 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 5 years ago
- A record of the analysis pipelines used to create the HTAPP data☆19Updated this week
- pipelines to process scRNA-seq data☆11Updated 3 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- ☆10Updated 5 months ago
- scover☆22Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last week
- An R package to analyze single-cell V(D)J data☆24Updated 11 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆20Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆20Updated this week
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- R package for Flexible dot plots☆26Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆13Updated last year
- Single-cell RNA Processing Software☆11Updated 3 weeks ago