gillislab / pyMNLinks
Python Implementation of MetaNeighbor scRNAseq Analysis Method
☆9Updated last year
Alternatives and similar repositories for pyMN
Users that are interested in pyMN are comparing it to the libraries listed below
Sorting:
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 4 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆18Updated 4 years ago
- ☆27Updated 10 months ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- ☆21Updated 3 years ago
- ☆67Updated 2 months ago
- ☆11Updated 5 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 11 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Updated 10 months ago
- ☆26Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 3 years ago
- scLearn:Learning for single cell assignment☆35Updated 8 months ago
- ☆35Updated 2 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 7 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago