Python Implementation of MetaNeighbor scRNAseq Analysis Method
☆10Nov 11, 2025Updated 6 months ago
Alternatives and similar repositories for pyMN
Users that are interested in pyMN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A method to rapidly assess cell type identity using both functional and random gene sets☆41Jan 9, 2025Updated last year
- Repository to reproduce analyses from manuscript titled "Noninvasive blood tests for fetal development predict gestational age and preter…☆11May 13, 2023Updated 3 years ago
- ☆49Mar 1, 2018Updated 8 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Spring 2017 Chemical and Reaction Engineering☆12May 9, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 5 years ago
- Notebooks in computational metabolomics☆15Feb 3, 2025Updated last year
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- Dataflow based workflow framework☆41May 15, 2021Updated 5 years ago
- ☆19Aug 29, 2025Updated 8 months ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- A tracker and ad free version of rampatra/photography☆21Jun 12, 2024Updated last year
- ☆20May 30, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Dec 29, 2019Updated 6 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆94Jul 23, 2024Updated last year
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- Legend made easy for matplotlib☆36May 6, 2026Updated 3 weeks ago
- HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.☆29Aug 23, 2025Updated 9 months ago
- ☆59Apr 28, 2020Updated 6 years ago
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- ☆10May 2, 2016Updated 10 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Generating interfaces(CLI, Qt GUI, Dash web app) from a Python function or a command program.☆41Apr 1, 2023Updated 3 years ago
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- A shell to facilitate loading / running CIBERSORT software in structured environments☆25May 9, 2018Updated 8 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis of patch-seq data in pancreatic islets (ND, T2D and T1D)☆11May 9, 2020Updated 6 years ago
- Genome-wide contact analysis using sklearn☆74Mar 23, 2024Updated 2 years ago
- how to build up Knowledge graph☆13Nov 16, 2021Updated 4 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated 2 months ago
- 基于语义的文本相似度计算☆10Jan 22, 2019Updated 7 years ago
- Python bindings to UCSC BigWig and BigBed library☆36Apr 6, 2026Updated last month
- 本文介绍的是利用学生身份可以享受到的相关学生优惠权益，但也希望各位享受权利的同时不要忘记自己的义务，不要售卖、转手自己的学生优惠资格，使得其他同学无法受益。☆18Jun 25, 2019Updated 6 years ago