WenchaoLin / GCcalcLinks
Calculate circos format data of GC content and GC skew from genome data.
☆12Updated 3 months ago
Alternatives and similar repositories for GCcalc
Users that are interested in GCcalc are comparing it to the libraries listed below
Sorting:
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- ☆21Updated 6 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- ☆22Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- ☆35Updated 5 years ago
- A box of genomics tools☆21Updated 5 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 9 months ago
- ☆29Updated 2 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- ☆25Updated 3 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated 3 weeks ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆51Updated 7 months ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆35Updated 7 years ago
- ☆44Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago