WenchaoLin / GCcalcLinks
Calculate circos format data of GC content and GC skew from genome data.
☆12Updated 2 months ago
Alternatives and similar repositories for GCcalc
Users that are interested in GCcalc are comparing it to the libraries listed below
Sorting:
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- ☆21Updated 6 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 8 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- ☆22Updated 6 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 4 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆31Updated last year
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- ☆33Updated 4 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- read and analyse RepeatMasker output☆27Updated 2 years ago
- ☆29Updated 2 years ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 11 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- A box of genomics tools☆21Updated 5 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated last month
- ☆44Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 3 months ago
- ☆36Updated last year
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated this week
- De novo annotation of young retrotransposons☆48Updated 3 years ago