fork of the GPU genome aligner
☆41Mar 27, 2026Updated 3 months ago
Alternatives and similar repositories for KegAlign
Users that are interested in KegAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegal…☆14Jul 17, 2026Updated last week
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- A rapid and low-memory multiple-genome aligner for closely related genomes☆26Sep 3, 2025Updated 10 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆24Feb 16, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 2 weeks ago
- ☆153Updated this week
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆24Jan 21, 2026Updated 6 months ago
- Portable solution to generate genome alignment chains using lastz☆68Jul 15, 2026Updated last week
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last month
- Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, R…☆17Jul 2, 2026Updated 3 weeks ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Neural network classification of TE☆100Apr 3, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated last week
- A gap-closing software tool that uses long reads to enhance genome assembly.☆24Apr 25, 2024Updated 2 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆37Mar 27, 2019Updated 7 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 3 weeks ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 8 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆203Apr 27, 2026Updated 2 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- ☆42May 19, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Apr 26, 2026Updated 2 months ago
- ☆28May 12, 2026Updated 2 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆26Aug 20, 2020Updated 5 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- Galaxy Workflow Format 2☆14Updated this week
- A packer.io configuration for building out Galaxy (http://galaxyproject.org/) tool development environments.☆10Dec 1, 2024Updated last year
- Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.☆20Mar 25, 2026Updated 4 months ago
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated last month
- Using Deep Learning to predict gene annotations☆299Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FastOMA is a scalable software package to infer orthology relationship.☆99Updated this week
- usegalaxy.* common tools☆22Updated this week
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Jul 15, 2026Updated last week
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Updated this week
- plot genome alignment synteny☆20May 25, 2020Updated 6 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago