galaxyproject / KegAlignLinks
fork of the GPU genome aligner
☆20Updated last month
Alternatives and similar repositories for KegAlign
Users that are interested in KegAlign are comparing it to the libraries listed below
Sorting:
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- ☆20Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆58Updated 2 months ago
- Banded Striped DNA Sequence Alignment☆48Updated 2 years ago
- Linear-time de novo Long Read Assembler☆41Updated last month
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 2 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated 3 weeks ago
- ☆58Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ULTRA Locates Tandemly Repetitive Areas☆35Updated last month
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆36Updated 3 years ago
- A Nextflow pipeline for evaluating assembly quality☆38Updated 2 weeks ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- ☆32Updated last year
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Complete assemblies of non-human primate genomes☆53Updated 6 months ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- ☆29Updated 4 years ago
- vembrane filters VCF records using python expressions☆66Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 7 months ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆57Updated last year
- Scoring GT/AG sites for improving spliced alignment☆46Updated 2 weeks ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 3 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 5 months ago
- ☆68Updated 3 weeks ago