Alternatives and similar repositories for KegAlign

Users that are interested in KegAlign are comparing it to the libraries listed below

• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆32Updated last month
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆12Updated 4 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 3 months ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆60Updated 5 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated last month
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆40Updated 4 months ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated this week
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆31Updated 6 months ago
• pierrepeterlongo / back_to_sequences
  ☆42Updated 3 months ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆27Updated 5 months ago
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆29Updated 6 months ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆32Updated 2 months ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• broadinstitute / GATK-for-Microbes
  ☆27Updated 3 years ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆15Updated 3 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• agshumate / LiftoffTools
  ☆27Updated last year
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated 2 years ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 3 weeks ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆24Updated 6 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 4 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 2 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated last month