circos pipeline
☆20May 8, 2021Updated 4 years ago
Alternatives and similar repositories for Circos-Pipeline
Users that are interested in Circos-Pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- Various bioinformatics tools☆20Oct 29, 2024Updated last year
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Draw pan- and core-genome curves from proteinortho output☆11Oct 26, 2023Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Oct 15, 2024Updated last year
- Best practices and workflow for genome annotation☆79Apr 14, 2025Updated 11 months ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- conserved non-coding sequence☆16Feb 21, 2022Updated 4 years ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Sep 2, 2021Updated 4 years ago
- ☆11Aug 20, 2019Updated 6 years ago
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆17Nov 23, 2023Updated 2 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Dec 5, 2024Updated last year
- Python function for TMB snake plots☆16Feb 12, 2026Updated last month
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- ☆13Apr 22, 2021Updated 4 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Oct 5, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆13Dec 7, 2020Updated 5 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago
- ☆15Feb 22, 2022Updated 4 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆32Dec 20, 2024Updated last year
- Evolutionary Bioinformatics Toolkit (EBT)☆12Jul 14, 2020Updated 5 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 5 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 8 years ago
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated last month
- A pipeline for isoseq☆23Jun 8, 2018Updated 7 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- Materials for Spring 2021 Applied Genomics Course☆54Apr 21, 2021Updated 4 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago