czheluo / Circos-Pipeline
circos pipeline
☆19Updated 3 years ago
Alternatives and similar repositories for Circos-Pipeline:
Users that are interested in Circos-Pipeline are comparing it to the libraries listed below
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆11Updated 4 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 2 weeks ago
- This is the Haplotypo repository☆20Updated 9 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- ☆21Updated 5 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆12Updated last year
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- ☆28Updated 2 years ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆14Updated 7 years ago
- Scripts for NGS processing☆17Updated 7 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆21Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Updated 10 years ago
- ☆16Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago