patidarr / ngs_pipelineLinks
Exome/Capture/RNASeq Pipeline Implementation using snakemake
☆47Updated 7 years ago
Alternatives and similar repositories for ngs_pipeline
Users that are interested in ngs_pipeline are comparing it to the libraries listed below
Sorting:
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- ☆78Updated 11 years ago
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 9 months ago
- ☆69Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Tools for analyzing DNA methylation data☆42Updated this week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 3 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆41Updated last year
- Precision HLA typing from next-generation sequencing data☆67Updated 3 weeks ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 11 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- An awk-like VCF parser☆56Updated last year
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago