ecbush / xenoGILinks
Code for detecting genomic island insertions in clades of microbes.
☆19Updated 2 years ago
Alternatives and similar repositories for xenoGI
Users that are interested in xenoGI are comparing it to the libraries listed below
Sorting:
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 3 years ago
- Discover and annotate the virome☆58Updated 3 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- A package to annotate protein sequences☆60Updated 11 months ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- The gview wiki migrated to GitHub.☆11Updated 5 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- IslandPath standalone software☆35Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated 2 months ago
- Strain Resolution ON Graphs☆50Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- MAG Circularization Method☆32Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- Influenza genome analysis Nextflow workflow☆31Updated 4 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 2 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 6 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Updated 2 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated last month
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated last week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last week
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- ☆43Updated 7 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Pipeline for major biological analyses.☆36Updated 3 years ago