ecbush / xenoGI
Code for detecting genomic island insertions in clades of microbes.
☆19Updated last year
Alternatives and similar repositories for xenoGI:
Users that are interested in xenoGI are comparing it to the libraries listed below
- Influenza genome analysis Nextflow workflow☆26Updated this week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆17Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last month
- IslandPath standalone software☆31Updated last year
- Intra-species bacterial contamination detection☆25Updated 2 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 5 months ago
- Prophage Activity Estimator☆26Updated 10 months ago
- ☆12Updated 3 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 5 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 weeks ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- ☆16Updated 4 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 4 months ago
- Calculate assocations between genes and traits☆23Updated last month
- HMmer Based UndeRstandinG of gene clustERs☆14Updated 5 months ago
- MAG Circularization Method☆33Updated 2 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated this week
- ☆38Updated last week