Probabilistic topic model for identifying cellular micro-environments.
☆28Jul 6, 2023Updated 3 years ago
Alternatives and similar repositories for spatial_lda
Users that are interested in spatial_lda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrated pipeline for multiplexed image analysis☆110Sep 18, 2026Updated last month
- ☆27Aug 27, 2026Updated 2 months ago
- ExperimentHub collection of imaging mass cytometry datasets☆14Sep 7, 2026Updated last month
- Scripts for interacting with and generating data from the commercial MIBIScope☆17Aug 11, 2026Updated 2 months ago
- Spatial Single-Cell Analysis Toolkit☆116Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆59Sep 2, 2026Updated 2 months ago
- Package for analysis and experimental design of multiplexed imaging data☆12Mar 3, 2025Updated last year
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated 3 months ago
- A package for the analysis of Imaging Mass Cytometry data☆17Mar 25, 2026Updated 7 months ago
- ☆20Apr 8, 2025Updated last year
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- OpenSeaDragon TileSource for SZI files☆12Aug 13, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Software for processing and analyzing STARmap experiments.☆40Aug 27, 2019Updated 7 years ago
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆15Jul 4, 2024Updated 2 years ago
- ☆30Oct 4, 2024Updated 2 years ago
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 6 years ago
- This repository contains the implementation of an image-based LDA model for use in semi-automation of the image annotation and data curat…☆15Oct 20, 2026Updated last week
- Bayesian Segmentation of Spatial Transcriptomics Data☆219Oct 2, 2026Updated last month
- ☆45Jun 3, 2026Updated 4 months ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 10 years ago
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆14Aug 3, 2023Updated 3 years ago
- ☆18Sep 16, 2019Updated 7 years ago
- Deeply supervised density regression for automatic cell counting in microscopy images☆12Jan 31, 2022Updated 4 years ago
- ☆15Aug 22, 2016Updated 10 years ago
- Gaussian processes in TensorFlow via R☆16Sep 10, 2017Updated 9 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- ☆108Updated this week
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆29Jan 9, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆37Jan 29, 2025Updated last year
- TensorFlow-Implementation of Deep Archetypal Analysis☆12Aug 4, 2021Updated 5 years ago
- ☆14Jan 27, 2024Updated 2 years ago
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 8 months ago
- Summary statistics for repertoires☆18Feb 1, 2023Updated 3 years ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆35Nov 30, 2023Updated 2 years ago
- This project discovers equations from data using SINDy (sparse identification on nonlinear dynamics).☆13Mar 22, 2022Updated 4 years ago