calico / spatial_ldaLinks
Probabilistic topic model for identifying cellular micro-environments.
☆28Updated 2 years ago
Alternatives and similar repositories for spatial_lda
Users that are interested in spatial_lda are comparing it to the libraries listed below
Sorting:
- Integrated pipeline for multiplexed image analysis☆98Updated 7 months ago
- ☆35Updated last week
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- ☆52Updated 4 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆59Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- ☆39Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Spatial Single-Cell Analysis Toolkit☆101Updated 4 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated 6 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆64Updated 5 months ago
- Interactive visualization of spatial omics data☆70Updated last week
- A toolkit for processing multiplexed tissue images☆65Updated 3 weeks ago
- Accessible and interoperable whole slide image analysis☆150Updated 2 weeks ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
- comseg☆24Updated 9 months ago
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆21Updated 6 months ago
- Histology Topography Cytometry Analysis Toolbox☆68Updated last week
- ☆69Updated 2 years ago
- ☆62Updated last week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆62Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆99Updated this week
- Multiple-choice microscopy pipeline☆137Updated last week
- ☆13Updated 3 months ago
- QuPath extension to interactively align images☆26Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated last week
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆85Updated last year