haotianteng / FICT
FISH Iterative Cell Typing
☆11Updated 11 months ago
Alternatives and similar repositories for FICT:
Users that are interested in FICT are comparing it to the libraries listed below
- CAST package☆31Updated 4 months ago
- ☆22Updated last year
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆23Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆33Updated this week
- Bayesian Analytics for Spatial Segmentation☆25Updated 5 months ago
- ☆41Updated last month
- ☆19Updated last year
- ☆25Updated 5 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- ☆18Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated 3 months ago
- Test genes for Spatial Variation☆14Updated 2 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆25Updated 5 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated this week
- Interactive applications of stlearn☆16Updated last year
- Spatial direct messaging detected by bivariate Moran☆25Updated last month
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆26Updated 5 months ago
- ☆21Updated last year
- Work with trained factor models in Python☆31Updated 4 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 7 months ago
- ☆45Updated 4 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- ☆16Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆19Updated 7 months ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆14Updated 3 months ago
- ☆41Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last week
- ☆47Updated 2 years ago
- ☆32Updated last month