Alternatives and similar repositories for FICT

Users that are interested in FICT are comparing it to the libraries listed below

• wanglab-broad / CAST
  CAST package
  ☆40Updated 8 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆32Updated 2 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆29Updated last month
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 9 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 8 months ago
• TencentAILabHealthcare / pysodb
  ☆24Updated last year
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated 3 months ago
• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• raphael-group / paste_reproducibility
  ☆12Updated 2 years ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆16Updated 6 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆57Updated 2 weeks ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆38Updated 6 months ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆20Updated 3 weeks ago
• prabhakarlab / Banksy_py
  ☆54Updated 6 months ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• dpeerlab / ENVI
  ☆48Updated last month
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 6 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆27Updated 11 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• rdong08 / spatialDWLS_dataset
  code and dataset for spatialDWLS
  ☆13Updated 4 years ago
• walsh-quail-labs / IMC-Lung
  ☆17Updated 2 years ago
• jbergenstrahle / STUtility
  ☆52Updated 2 years ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆23Updated 10 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated 11 months ago
• almaan / eggplant
  ☆22Updated 2 years ago
• bioFAM / FISHFactor
  A probabilistic factor model for spatial transcriptomics data with subcellular resolution
  ☆23Updated 2 years ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆14Updated 3 years ago