haotianteng / FICTLinks
FISH Iterative Cell Typing
☆11Updated last year
Alternatives and similar repositories for FICT
Users that are interested in FICT are comparing it to the libraries listed below
Sorting:
- ☆12Updated 2 years ago
- ☆24Updated last year
- CAST package☆40Updated 8 months ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆23Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆27Updated this week
- ☆27Updated 9 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated 3 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 4 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- ☆26Updated 5 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated last week
- Spatial Single Cell transcriptomic library☆17Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 11 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆25Updated 2 years ago
- ☆54Updated this week
- ☆29Updated last year
- ☆22Updated 2 years ago
- ☆53Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated this week
- Test genes for Spatial Variation☆14Updated 6 months ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 3 weeks ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆29Updated last month
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 7 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 2 years ago
- ☆57Updated 7 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆15Updated 2 months ago
- Work with trained factor models in Python☆33Updated 8 months ago
- ☆36Updated last year