haotianteng / FICTLinks
FISH Iterative Cell Typing
☆11Updated last year
Alternatives and similar repositories for FICT
Users that are interested in FICT are comparing it to the libraries listed below
Sorting:
- CAST package☆42Updated last year
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25Updated 2 years ago
- ☆28Updated 2 years ago
- ☆30Updated last year
- Spatial Single Cell transcriptomic library☆18Updated 2 weeks ago
- ☆14Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆17Updated last year
- ☆41Updated last week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 11 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Updated 3 years ago
- Test genes for Spatial Variation☆15Updated last year
- Interactive applications of stlearn☆15Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 9 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- Package for the analysis of Transcripts outside segmented cells in ST data☆25Updated this week
- ☆23Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- ☆22Updated 3 weeks ago
- Spatial One☆30Updated last year
- ☆13Updated 3 years ago
- ☆29Updated last year
- MERFISH decoding software☆26Updated 5 months ago
- ☆27Updated 6 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago