FISH Iterative Cell Typing
☆11Mar 24, 2024Updated last year
Alternatives and similar repositories for FICT
Users that are interested in FICT are comparing it to the libraries listed below
Sorting:
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- ☆28Jan 4, 2024Updated 2 years ago
- ☆14Jan 25, 2023Updated 3 years ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 3 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- collection of mass spectrometry imaging workflows☆22Updated this week
- DeepCell Kiosk Distribution for Kubernetes on GKE and AWS☆37Jul 12, 2023Updated 2 years ago
- ☆20May 1, 2023Updated 2 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- ☆18Apr 5, 2024Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24May 10, 2025Updated 9 months ago
- Sparse Canonical Correlation Analysis (sCCA)☆20Dec 3, 2021Updated 4 years ago
- stPlus: reference-based enhancement of spatial transcriptomics☆20Jan 6, 2024Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 3 months ago
- ☆23Mar 29, 2023Updated 2 years ago
- ☆33Oct 10, 2025Updated 4 months ago
- ☆27Jun 4, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆20Oct 22, 2025Updated 4 months ago
- Fast reconstruction of spatial networks from bioimages.☆26Apr 25, 2025Updated 10 months ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆23May 19, 2025Updated 9 months ago
- Initialization is critical for preserving global data structure in both t-SNE and UMAP☆24Feb 3, 2021Updated 5 years ago
- AmpliCI, a model-based algorithm for denoising Illumina amplicon data.☆24Nov 28, 2025Updated 3 months ago
- Probabilistic topic model for identifying cellular micro-environments.☆29Jul 6, 2023Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆40Updated this week
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Nov 4, 2024Updated last year
- Single Cell Analysis Automated Workflow☆28May 22, 2023Updated 2 years ago
- ☆30Oct 4, 2024Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- ☆71Jan 18, 2023Updated 3 years ago
- Bayesian Analytics for Spatial Segmentation☆30May 4, 2025Updated 10 months ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 8 months ago
- nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder☆29Jul 5, 2024Updated last year