Alternatives and similar repositories for FICT

Users that are interested in FICT are comparing it to the libraries listed below

• TencentAILabHealthcare / pysodb
  ☆24Updated last year
• wanglab-broad / CAST
  CAST package
  ☆40Updated last year
• bioFAM / FISHFactor
  A probabilistic factor model for spatial transcriptomics data with subcellular resolution
  ☆24Updated 2 years ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆30Updated 3 months ago
• raphael-group / paste_reproducibility
  ☆13Updated 2 years ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆15Updated 10 months ago
• BiomedicalMachineLearning / Spacell
  ☆27Updated 5 years ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆44Updated this week
• dyxmvp / Spatial_ATAC-seq
  ☆23Updated 2 years ago
• walsh-quail-labs / IMC-Lung
  ☆20Updated 2 years ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆39Updated 8 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆61Updated 2 months ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆27Updated 2 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆57Updated 4 months ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆16Updated 11 months ago
• dpeerlab / ENVI
  ☆50Updated 3 weeks ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 6 months ago
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆18Updated 2 weeks ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆61Updated 2 years ago
• STOmics / CellBin
  Tools for generating single-cell gene expression data
  ☆34Updated 4 months ago
• tabdelaal / SIRV
  Spatial RNA velocity
  ☆10Updated last year
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆63Updated 4 months ago
• walsh-quail-labs / IMC_Brain
  ☆20Updated 2 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆43Updated 5 months ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆30Updated 5 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆22Updated last year
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆16Updated last month