Alternatives and similar repositories for FICT:

Users that are interested in FICT are comparing it to the libraries listed below

• wanglab-broad / CAST
  CAST package
  ☆34Updated 6 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆26Updated 7 months ago
• TencentAILabHealthcare / pysodb
  ☆24Updated last year
• bioFAM / FISHFactor
  A probabilistic factor model for spatial transcriptomics data with subcellular resolution
  ☆23Updated 2 years ago
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆17Updated 4 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆27Updated this week
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 4 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated last week
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 7 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆27Updated 9 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated 2 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆23Updated last year
• jbergenstrahle / STUtility
  ☆51Updated 2 years ago
• rdong08 / spatialDWLS_dataset
  code and dataset for spatialDWLS
  ☆13Updated 4 years ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆21Updated 9 months ago
• zhiqianZ / supCPM
  The algorithm, supervised Capacity Mapping (supCPM), to visualize scRNA-seq data
  ☆7Updated 8 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆50Updated 3 months ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆16Updated 5 months ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 2 months ago
• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• LiHongCSBLab / SOAPy
  ☆29Updated 2 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆36Updated 5 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆27Updated 3 weeks ago
• JinmiaoChenLab / scTM
  scTM: A package for topic modelling in transcriptomics data
  ☆20Updated last year
• liuqivandy / SpaGene
  ☆22Updated last year
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆54Updated last month