davidliwei / RNASeqReadSimulatorLinks
RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.
☆21Updated 10 years ago
Alternatives and similar repositories for RNASeqReadSimulator
Users that are interested in RNASeqReadSimulator are comparing it to the libraries listed below
Sorting:
- Useful tools for working with Salmon output☆38Updated 5 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- BigWig and BAM utilities☆97Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 3 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- ☆26Updated last month
- Reference genome resource manager☆75Updated last year
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Merging paired-end reads and removing adapters☆46Updated 5 months ago
- Personal diploid genome creation and coordinate conversion☆30Updated 5 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Evolutionary Transcriptomics with R☆45Updated this week