davidliwei / RNASeqReadSimulator
RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.
☆21Updated 10 years ago
Alternatives and similar repositories for RNASeqReadSimulator:
Users that are interested in RNASeqReadSimulator are comparing it to the libraries listed below
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Repository for the Anczukow-Lab splicing pipeline☆15Updated last month
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆68Updated 4 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Mapped QC analysis program☆44Updated 6 years ago
- Long read to rMATS☆31Updated last year
- ☆21Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Indel caller for DNA-seq or RNA-seq☆14Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Materials for Spring 2019 Applied Genomics Course☆21Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- A python package and a set of shell commands to handle GTF files☆48Updated 10 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated this week