RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.
☆21Oct 16, 2014Updated 11 years ago
Alternatives and similar repositories for RNASeqReadSimulator
Users that are interested in RNASeqReadSimulator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- icSHAPE pipeline☆32Oct 1, 2015Updated 11 years ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated last year
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 4 years ago
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Examples of kallisto + sleuth☆11May 18, 2017Updated 9 years ago
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆24Jul 14, 2026Updated 2 months ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- CRISPR, faster, better – The Crackling method for whole-genome target detection☆11Jan 11, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆141Dec 15, 2022Updated 3 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆31Jul 13, 2021Updated 5 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Small(-ish) datasets for fun and teaching☆17Apr 5, 2016Updated 10 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 9 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 9 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package for feature selection in topological spaces.☆11Aug 12, 2021Updated 5 years ago
- Analysis tools for PhIP-seq experiments☆13Jan 24, 2022Updated 4 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 8 years ago
- Fully indexable dictionaries - access/rank/select operations☆13Sep 10, 2018Updated 8 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆490Aug 11, 2025Updated last year
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 7 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- ☆11Feb 9, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pan-Genomic Matching Statistics☆59Apr 3, 2024Updated 2 years ago
- Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.☆33Sep 6, 2023Updated 3 years ago
- ☆18Apr 10, 2015Updated 11 years ago
- Programming framework for serverless compute☆15Dec 3, 2019Updated 6 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- computational training at Fred Hutch☆12Jun 11, 2021Updated 5 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Aug 24, 2026Updated last month