davidliwei / RNASeqReadSimulatorLinks
RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.
☆21Updated 11 years ago
Alternatives and similar repositories for RNASeqReadSimulator
Users that are interested in RNASeqReadSimulator are comparing it to the libraries listed below
Sorting:
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 7 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Useful tools for working with Salmon output☆39Updated 5 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Modify existing reference fasta and gff3/gtf files to include a new sequence☆33Updated 7 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- Mapped QC analysis program☆43Updated 7 years ago
- SeqMonk NGS visualisation and analysis tool☆51Updated 2 months ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Fast fusion detection using kallisto☆79Updated 7 months ago
- ☆78Updated 11 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago