RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.
☆21Oct 16, 2014Updated 11 years ago
Alternatives and similar repositories for RNASeqReadSimulator
Users that are interested in RNASeqReadSimulator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 3 years ago
- ☆23May 16, 2020Updated 5 years ago
- icSHAPE pipeline☆31Oct 1, 2015Updated 10 years ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated last year
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 3 years ago
- ☆27Jun 4, 2023Updated 2 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 8 years ago
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 4 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆24May 19, 2025Updated 10 months ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- CLI tool to manage the download of large quantities of files from DNAnexus☆19Feb 19, 2026Updated last month
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆140Dec 15, 2022Updated 3 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Jul 13, 2021Updated 4 years ago
- Small(-ish) datasets for fun and teaching☆17Apr 5, 2016Updated 10 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- An R package for feature selection in topological spaces.☆10Aug 12, 2021Updated 4 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- Fully indexable dictionaries - access/rank/select operations☆13Sep 10, 2018Updated 7 years ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 2 months ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ENCODE DNase-seq pipeline essentials for running on dnanexus.☆12Sep 25, 2019Updated 6 years ago
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 2 years ago
- Sequence-to-graph mapper and graph generator☆475Aug 11, 2025Updated 7 months ago
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 6 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Pan-Genomic Matching Statistics☆55Apr 3, 2024Updated 2 years ago
- ☆11Feb 9, 2019Updated 7 years ago