BodenmillerGroup / imcRtoolsLinks
An R package for handling and analysing imaging mass cytometry data
☆27Updated last month
Alternatives and similar repositories for imcRtools
Users that are interested in imcRtools are comparing it to the libraries listed below
Sorting:
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆78Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- ☆41Updated 4 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 2 months ago
- ☆40Updated 2 years ago
- R package for semi-supervised single-cell data integration☆87Updated last week
- Latent Embedding Multivariate Regression☆94Updated 9 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆40Updated 3 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated 3 weeks ago
- ☆45Updated 2 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- AnnData interoperability in R☆91Updated last week
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆76Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆36Updated 5 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last month
- Using self-organizing maps for visualization and interpretation of cytometry data☆29Updated 3 weeks ago
- ☆29Updated last month
- ☆88Updated last month