BodenmillerGroup / imcRtools
An R package for handling and analysing imaging mass cytometry data
☆24Updated 3 months ago
Alternatives and similar repositories for imcRtools:
Users that are interested in imcRtools are comparing it to the libraries listed below
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆30Updated this week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆67Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆28Updated 8 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated this week
- An R package for performing cell typing in SMI and other single cell data☆33Updated 2 months ago
- ☆37Updated 8 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 5 months ago
- Cell type pipes for R☆51Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 3 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆40Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆70Updated 9 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆36Updated 2 months ago
- ☆46Updated last year
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated 10 months ago
- ☆35Updated 2 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆30Updated 3 weeks ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆81Updated 5 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- R package for pathway analysis in scRNA-seq data☆69Updated 6 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆31Updated 3 weeks ago
- R package for specialised analysis of single cell data☆37Updated 2 years ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆30Updated 9 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆46Updated this week
- Using self-organizing maps for visualization and interpretation of cytometry data☆26Updated 7 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 4 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆55Updated 10 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated 4 months ago