An R package for handling and analysing imaging mass cytometry data
☆33Oct 6, 2026Updated last week
Alternatives and similar repositories for imcRtools
Users that are interested in imcRtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Apr 5, 2024Updated 2 years ago
- Imaging Mass Cytometry (IMC) file type support for napari☆13Jul 8, 2026Updated 3 months ago
- ☆30Jan 31, 2026Updated 8 months ago
- Python package for reading imaging mass cytometry (IMC) files☆20Oct 5, 2026Updated last week
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆77Nov 4, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The Single-Cell Pathology Landscape of Breast Cancer☆28Jan 14, 2020Updated 6 years ago
- ☆20May 1, 2023Updated 3 years ago
- A toolkit for processing multiplexed tissue images☆68Updated this week
- ☆12Updated this week
- A package for the analysis of Imaging Mass Cytometry data☆17Mar 25, 2026Updated 6 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 8 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆197Updated this week
- A pixel classification based multiplexed image segmentation pipeline☆108Dec 5, 2023Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆27Aug 27, 2026Updated last month
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 5 years ago
- ☆38Dec 13, 2023Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 5 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆96Oct 9, 2024Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆58Jan 6, 2025Updated last year
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆19Sep 21, 2026Updated 3 weeks ago
- Implementation of CellNEST method☆70Jun 23, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Geometric single cell deconvolution☆21Sep 7, 2026Updated last month
- Cytometry dATa anALYsis Tools☆75Apr 28, 2026Updated 5 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 10 months ago
- Goslin is the Grammar on succinct lipid nomenclature.☆14Sep 16, 2026Updated 3 weeks ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated last year
- Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling☆15Jul 11, 2024Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆110Dec 11, 2023Updated 2 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆15Jun 1, 2020Updated 6 years ago
- ☆28Jun 4, 2023Updated 3 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- Extension of SpatialExperiment with sf☆58Sep 26, 2026Updated 2 weeks ago
- Scripts for interacting with and generating data from the commercial MIBIScope☆17Aug 11, 2026Updated 2 months ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆24Jul 14, 2026Updated 3 months ago