An R package for handling and analysing imaging mass cytometry data
☆31Apr 24, 2026Updated last week
Alternatives and similar repositories for imcRtools
Users that are interested in imcRtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Apr 5, 2024Updated 2 years ago
- ☆20May 1, 2023Updated 3 years ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Nov 4, 2024Updated last year
- ☆28Jan 31, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Imaging Mass Cytometry (IMC) file type support for napari☆13Oct 19, 2023Updated 2 years ago
- A toolkit for processing multiplexed tissue images☆69Apr 27, 2026Updated last week
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 2 months ago
- ☆11Feb 24, 2026Updated 2 months ago
- A package for the analysis of Imaging Mass Cytometry data☆15Mar 25, 2026Updated last month
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆13Aug 17, 2023Updated 2 years ago
- A pixel classification based multiplexed image segmentation pipeline☆107Dec 5, 2023Updated 2 years ago
- ☆27Oct 23, 2025Updated 6 months ago
- Python package for reading imaging mass cytometry (IMC) files☆18Apr 27, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- ☆37Dec 13, 2023Updated 2 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆90Oct 9, 2024Updated last year
- Implementation of CellNEST method☆68Apr 9, 2026Updated 3 weeks ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling☆15Jul 11, 2024Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 4 years ago
- A pipeline to transform images into valuable analysis items☆18Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Profile purification of single-cell spatial transcriptomics data☆31Nov 13, 2025Updated 5 months ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 6 months ago
- Cytometry dATa anALYsis Tools☆76Apr 28, 2026Updated last week
- Goslin is the Grammar on succinct lipid nomenclature.☆13Updated this week
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 5 months ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 6 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆98Dec 11, 2023Updated 2 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆173Apr 27, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Extension of SpatialExperiment with sf☆57Apr 24, 2026Updated last week
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆15Jun 1, 2020Updated 5 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- ☆27Jun 4, 2023Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- ☆25Apr 22, 2026Updated last week