An R package for fast topic inference to identify tissue architecture in multiplexed images
☆15Mar 1, 2026Updated 3 weeks ago
Alternatives and similar repositories for SpaTopic
Users that are interested in SpaTopic are comparing it to the libraries listed below
Sorting:
- Repository for Discussions and Materials about The Carpentries Workbench☆20Updated this week
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Jul 24, 2025Updated 7 months ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆37Apr 30, 2025Updated 10 months ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16May 26, 2025Updated 9 months ago
- scTM: A package for topic modelling in transcriptomics data☆24May 1, 2024Updated last year
- ☆27Jun 4, 2023Updated 2 years ago
- Profile purification of single-cell spatial transcriptomics data☆30Nov 13, 2025Updated 4 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆51Aug 11, 2025Updated 7 months ago
- ☆17Aug 1, 2023Updated 2 years ago
- Produce scientific figures in R that look exactly how you want☆18Jan 17, 2026Updated 2 months ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …☆21May 17, 2025Updated 10 months ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆23May 19, 2025Updated 10 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- ☆25Aug 24, 2023Updated 2 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated last year
- ☆23Jan 7, 2026Updated 2 months ago
- A flexible parser generator producing output from object-oriented hierarchical context-free grammar specifications.