A package for the analysis of Imaging Mass Cytometry data
☆15Mar 25, 2026Updated 3 months ago
Alternatives and similar repositories for imc
Users that are interested in imc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated last year
- ☆11Jul 6, 2023Updated 3 years ago
- R based workflow for multiplexed imaging data☆39Mar 20, 2026Updated 4 months ago
- ☆20May 1, 2023Updated 3 years ago
- ☆28Jun 4, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- code and data for Liu, Schilling, et al Nat Med 2019☆18Aug 1, 2024Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- An R package for handling and analysing imaging mass cytometry data☆33May 19, 2026Updated 2 months ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- A flexible parser generator producing output from object-oriented hierarchical context-free grammar specifications.☆12Nov 16, 2021Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 23, 2026Updated 3 weeks ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆29Jan 9, 2021Updated 5 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Jun 21, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21Jul 12, 2026Updated last week
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆23Jun 5, 2020Updated 6 years ago
- ☆27Oct 23, 2025Updated 8 months ago
- ☆10Feb 18, 2020Updated 6 years ago
- Python package for reading imaging mass cytometry (IMC) files☆20Jul 13, 2026Updated last week
- ☆29Jan 31, 2026Updated 5 months ago
- Implementation of efficient Graph-based Image segmentation paper☆10May 19, 2020Updated 6 years ago
- A Python 3 script for cleaning up the PDB file☆11Dec 20, 2017Updated 8 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 16s Qiime2 pipeline☆17Sep 26, 2018Updated 7 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- ☆12Apr 21, 2026Updated 3 months ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jul 6, 2026Updated 2 weeks ago
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 6 years ago
- ☆14Jul 1, 2025Updated last year
- ☆14Mar 17, 2026Updated 4 months ago
- DistMap☆15Nov 23, 2021Updated 4 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a tool for annotation of immunoglobulin genes in genome assemblies☆15Sep 22, 2025Updated 9 months ago
- A tiny Python library for writing multi-channel TIFF stacks.☆30Jul 13, 2026Updated last week
- ☆15Oct 10, 2023Updated 2 years ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Jun 22, 2026Updated 3 weeks ago
- ☆44May 11, 2026Updated 2 months ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- ☆12Mar 22, 2024Updated 2 years ago