A package for the analysis of Imaging Mass Cytometry data
☆15Mar 5, 2026Updated 2 weeks ago
Alternatives and similar repositories for imc
Users that are interested in imc are comparing it to the libraries listed below
Sorting:
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated 9 months ago
- ☆11Jul 6, 2023Updated 2 years ago
- R based workflow for multiplexed imaging data☆36Updated this week
- ☆20May 1, 2023Updated 2 years ago
- ☆27Jun 4, 2023Updated 2 years ago
- code and data for Liu, Schilling, et al Nat Med 2019☆17Aug 1, 2024Updated last year
- ☆26Jan 31, 2026Updated last month
- Python package for reading imaging mass cytometry (IMC) files☆18Updated this week
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated this week
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- An R package for handling and analysing imaging mass cytometry data☆30Jan 6, 2026Updated 2 months ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- A flexible parser generator producing output from object-oriented hierarchical context-free grammar specifications.☆12Nov 16, 2021Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 8 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated 11 months ago
- ☆10Feb 18, 2020Updated 6 years ago
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆23Jun 5, 2020Updated 5 years ago
- Implementation of efficient Graph-based Image segmentation paper☆10May 19, 2020Updated 5 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 5 months ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- ☆10Apr 30, 2025Updated 10 months ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated last year
- ☆14Jul 1, 2025Updated 8 months ago
- ☆27Oct 23, 2025Updated 4 months ago
- Collection of KNN algorithms in C++☆19Feb 26, 2026Updated 3 weeks ago
- DistMap☆13Nov 23, 2021Updated 4 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- ☆13Jul 11, 2024Updated last year
- 16s Qiime2 pipeline☆16Sep 26, 2018Updated 7 years ago
- a tool for annotation of immunoglobulin genes in genome assemblies☆14Sep 22, 2025Updated 5 months ago
- ☆42Mar 12, 2026Updated last week
- ☆15Oct 10, 2023Updated 2 years ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Mar 12, 2026Updated last week
- The complete FlowSOM package known from R, now available in Python!☆27Updated this week
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 3 years ago
- ☆11Feb 1, 2023Updated 3 years ago