ElementoLab / imcLinks
A package for the analysis of Imaging Mass Cytometry data
☆13Updated last month
Alternatives and similar repositories for imc
Users that are interested in imc are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- ☆23Updated 3 months ago
- An R package for handling and analysing imaging mass cytometry data☆26Updated this week
- ☆36Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆20Updated 2 weeks ago
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 11 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last year
- ☆27Updated 8 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 7 months ago
- ☆52Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- ☆18Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated 6 months ago
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆18Updated last month
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- Spatial One☆28Updated 7 months ago
- Image Mass Cytometry analysis pipeline☆25Updated 2 weeks ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 8 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆10Updated last year
- Tools to handle IMC data☆23Updated 3 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 2 months ago
- ☆19Updated 5 years ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- A public MuSpAn page for community discussions and issue reporting.☆11Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆57Updated last week
- ☆18Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆14Updated last month