seqan / vaquitaLinks
Identification of structural variations
☆12Updated 3 years ago
Alternatives and similar repositories for vaquita
Users that are interested in vaquita are comparing it to the libraries listed below
Sorting:
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Demographic inference from whole genomes☆13Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Python bindings to minimap2☆16Updated 8 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- ☆12Updated 2 months ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- A utility for splitting mixed origin NGS reads☆10Updated 4 years ago
- ☆11Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- ☆28Updated 7 months ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Lossless VCF compression☆21Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Naive PCA for genotype data☆10Updated 9 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 3 months ago
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆20Updated last year
- ☆15Updated 7 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year