Alternatives and similar repositories for vaquita:

Users that are interested in vaquita are comparing it to the libraries listed below

• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆18Updated 4 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago
• KiddLab / QuicK-mer2
  ☆11Updated last year
• mpdunne / orthofiller
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆22Updated 2 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated last year
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆15Updated 3 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 8 months ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆22Updated 3 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 9 months ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆15Updated 10 months ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆28Updated 9 months ago
• mchaisso / mcutils
  ☆12Updated 3 years ago
• institut-de-genomique / NaS
  NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…
  ☆15Updated 7 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆24Updated last year
• DRL / blobtools-light
  Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
  ☆8Updated 9 years ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆32Updated 8 months ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 5 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated last year
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆20Updated 3 years ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 8 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 6 months ago