Alternatives and similar repositories for vaquita

Users that are interested in vaquita are comparing it to the libraries listed below

• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆19Updated 5 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 7 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 weeks ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 3 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 10 months ago
• mchaisso / mcutils
  ☆12Updated 4 months ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago
• jts / mbtools
  ☆14Updated last year
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 7 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• HKU-BAL / Translocator
  Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…
  ☆13Updated 5 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• VGP / vgp-tools
  ☆28Updated 4 months ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 5 months ago
• xa6xa6 / metaOthello
  ☆16Updated 7 years ago
• lh3 / naivepca
  Naive PCA for genotype data
  ☆10Updated 9 years ago
• DecodeGenetics / graphtyper-pipelines
  Recommended Graphtyper pipelines
  ☆14Updated 4 years ago
• Ecogenomics / BamM
  Metagenomics-focused BAM file manipulation
  ☆16Updated 6 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago
• ksahlin / BESST_RNA
  Scaffolding of genomic assemblies with RNA seq data
  ☆15Updated 9 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 3 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆27Updated last year