seqan / vaquitaLinks
Identification of structural variations
☆12Updated 3 years ago
Alternatives and similar repositories for vaquita
Users that are interested in vaquita are comparing it to the libraries listed below
Sorting:
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 weeks ago
- ☆12Updated last month
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆11Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Metagenomics-focused BAM file manipulation☆15Updated 6 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 10 months ago
- reference free variant assembly☆34Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Structural variant pipeline☆17Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆19Updated last year
- ☆32Updated 2 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- ☆14Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆21Updated 6 years ago