jkbonfield / fqzcomp
Fastq compression tool
☆15Updated 5 years ago
Alternatives and similar repositories for fqzcomp:
Users that are interested in fqzcomp are comparing it to the libraries listed below
- FQSqueezer - FASTQ compressor based on k-mer statistics☆16Updated last year
- ☆23Updated 8 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- A Lossy compressor for Quality Scores in Genomic Data☆12Updated 8 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆80Updated 2 years ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- CRAM format specification and java API for read data.☆59Updated 6 years ago
- my PhD thesis☆36Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding☆14Updated 4 years ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 9 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 2 months ago
- Adaptive semi-global banded alignment on string graphs☆66Updated 6 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 5 years ago
- Estimating k-mer coverage histogram of genomics data☆78Updated last year
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- Arioc: GPU-accelerated DNA short-read alignment☆69Updated 3 months ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- CARE: Context-Aware Read Error correction for Illumina reads☆20Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Scalable mpi aligner base on BWA☆7Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- ☆25Updated 4 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Updated 4 years ago