jkbonfield / fqzcomp
Fastq compression tool
☆14Updated 5 years ago
Alternatives and similar repositories for fqzcomp:
Users that are interested in fqzcomp are comparing it to the libraries listed below
- A Lossy compressor for Quality Scores in Genomic Data☆12Updated 8 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆15Updated last year
- ☆22Updated 8 years ago
- BWT-based index for graphs☆71Updated 2 weeks ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Updated 2 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆80Updated 2 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆69Updated 2 months ago
- CRAM format specification and java API for read data.☆58Updated 6 years ago
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated last month
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆38Updated last year
- ☆30Updated 8 years ago
- Self-contained, multi-threaded fasta/q parser☆43Updated 5 months ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- High-level API for storing and querying sequence variant data☆20Updated 5 years ago
- Compressor for Nanopore Sequencing Reads☆21Updated 2 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Histosketching Using Little Kmers☆56Updated last year
- Adaptive semi-global banded alignment on string graphs☆65Updated 6 years ago
- Scalable mpi aligner base on BWA☆7Updated 4 years ago
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆57Updated 7 months ago
- Fastq compression☆18Updated 5 years ago
- Efficient, parallel compression for terabyte-scale data☆40Updated 2 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆49Updated 2 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago