jkbonfield / fqzcompLinks
Fastq compression tool
☆17Updated 6 years ago
Alternatives and similar repositories for fqzcomp
Users that are interested in fqzcomp are comparing it to the libraries listed below
Sorting:
- FQSqueezer - FASTQ compressor based on k-mer statistics☆17Updated last year
- Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varie…☆39Updated 6 months ago
- Compressing next-generation sequencing data with extreme prejudice.☆83Updated 3 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆33Updated last week
- ☆22Updated 9 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 8 months ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- A Lossy compressor for Quality Scores in Genomic Data☆12Updated 9 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- High-level API for storing and querying sequence variant data☆20Updated 6 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 10 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- cfDNA Sequencing Pipeline with UMI☆11Updated last month
- Stupid Simple Elastic Compute Cloud☆16Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- ☆18Updated 7 years ago
- CRAM format specification and java API for read data.☆59Updated 7 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- C++ wrapper to tabix indexer☆17Updated 6 months ago
- Interface to various variant calling formats.☆31Updated last year
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- ☆26Updated 3 years ago
- Numerical Encoding for Human Genetic Variants☆42Updated 2 years ago