Alternatives and similar repositories for fqzcomp

Users that are interested in fqzcomp are comparing it to the libraries listed below

• sfu-compbio / compression-benchmark
  ☆22Updated 8 years ago
• refresh-bio / fqsqueezer
  FQSqueezer - FASTQ compressor based on k-mer statistics
  ☆16Updated last year
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 3 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 6 years ago
• mikelhernaez / qvz
  A Lossy compressor for Quality Scores in Genomic Data
  ☆12Updated 8 years ago
• mklarqvist / tachyon
  High-level API for storing and querying sequence variant data
  ☆20Updated 6 years ago
• mattloose / RUscripts
  Scripts for implementing read until and other examples.
  ☆31Updated 5 years ago
• dcjones / quip
  Compressing next-generation sequencing data with extreme prejudice.
  ☆81Updated 3 years ago
• sequencing / EAGLE
  Enhanced Artificial Genome Engine: next generation sequencing reads simulator
  ☆33Updated 5 years ago
• shubhamchandak94 / HARC
  Fastq compression
  ☆18Updated 5 years ago
• aquaskyline / SOAP3-dp
  To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…
  ☆31Updated last year
• Illumina / isaac2
  Aligner for sequencing data
  ☆21Updated 9 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago
• sfu-compbio / scalce
  FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding
  ☆14Updated 4 years ago
• dillonl / graphite
  Graphite - Graph-based variant adjudication
  ☆28Updated 4 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated 2 years ago
• fredjarlier / mpiBWA
  Scalable mpi aligner base on BWA
  ☆7Updated 5 years ago
• lh3 / gwfa
  Proof-of-concept implementation of GWFA for sequence-to-graph alignment
  ☆57Updated last year
• ekg / thesis
  my PhD thesis
  ☆36Updated 5 years ago
• broadinstitute / wdltool
  ☆18Updated 7 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 10 months ago
• nanoporetech / sloika
  Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling
  ☆25Updated 2 years ago
• vpc-ccg / lordfast
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
  ☆41Updated 5 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆52Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 5 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆58Updated 11 months ago