Alternatives and similar repositories for LORIS

Users that are interested in LORIS are comparing it to the libraries listed below

• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆26Updated 4 months ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆23Updated last month
• WonLab-CS / Vesalius
  Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
  ☆20Updated last month
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 2 weeks ago
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆42Updated 2 months ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆19Updated 4 years ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆19Updated 2 years ago
• AI4SCR / ATHENA
  ☆34Updated last month
• feiyoung / PRECAST
  an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…
  ☆11Updated last year
• ucsd-ccbb / NetColoc
  development of network co-localization tool
  ☆14Updated last month
• biosurf / cyCombine
  Robust Integration of Single-Cell Cytometry Datasets
  ☆28Updated last week
• ElementoLab / utag
  ☆38Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 6 months ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆36Updated 2 months ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆37Updated 2 years ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆16Updated 4 months ago
• TrigosTeam / SPIAT
  ☆24Updated 5 months ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated last week
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆25Updated last year
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 9 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated 2 months ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆15Updated last year
• kkang7 / CDSeq_R_Package
  CDSeq R Package
  ☆21Updated last month
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• whwanglab / PDAC
  ☆13Updated 3 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆39Updated 3 months ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago