nellore / runsLinks
Scripts for reproducing analyses of large RNA-seq datasets
☆15Updated 6 years ago
Alternatives and similar repositories for runs
Users that are interested in runs are comparing it to the libraries listed below
Sorting:
- Machine learning use cases for teaching☆13Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 10 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 2 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 8 months ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Use gene expression to predict phenotype sample information☆19Updated 7 years ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Updated 7 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated this week
- Pipelines for NGS, imputation, gwas, ...☆28Updated 5 years ago
- Genomic plot in trellis layout☆41Updated last year
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 4 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- ☆10Updated 6 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- countsimQC - Compare characteristic features of count data sets