Alternatives and similar repositories for InstaPrism

Users that are interested in InstaPrism are comparing it to the libraries listed below

• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆93Updated 7 months ago
• lhe17 / nebula
  ☆45Updated last month
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆47Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆91Updated 3 weeks ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆36Updated last year
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆46Updated 4 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• Winnie09 / Lamian
  ☆61Updated 4 months ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆50Updated 7 years ago
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated 4 months ago
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆21Updated 2 years ago
• noobCoding / Benchmarking-integration-of-differential-expression
  ☆25Updated 2 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• morris-lab / CellTagR
  This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
  ☆21Updated 3 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆36Updated 2 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated 3 weeks ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆44Updated 3 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 7 months ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 6 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• UPSUTER / GEMLI
  ☆32Updated 11 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year