liulab-dfci / TIDEpyLinks
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
☆32Updated 5 years ago
Alternatives and similar repositories for TIDEpy
Users that are interested in TIDEpy are comparing it to the libraries listed below
Sorting:
- ☆47Updated 11 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆20Updated 4 years ago
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- ☆30Updated 7 years ago
- ☆47Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- ☆41Updated 7 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 11 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- ☆52Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 4 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- ☆33Updated 4 years ago
- ☆32Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆62Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- R package of CSOmap(developing☆13Updated 3 years ago