liulab-dfci / lisa2View external linksLinks
☆33Nov 9, 2022Updated 3 years ago
Alternatives and similar repositories for lisa2
Users that are interested in lisa2 are comparing it to the libraries listed below
Sorting:
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- ☆17Feb 11, 2024Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 3 years ago
- CDSeq R Package☆21Jul 1, 2025Updated 7 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆301Mar 6, 2023Updated 2 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆38Updated this week
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- Updated DANPOS2 to work with python3☆24Feb 23, 2024Updated last year
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Dec 25, 2021Updated 4 years ago
- ☆16Apr 18, 2025Updated 9 months ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Nov 24, 2018Updated 7 years ago
- R package for generalized binary covariance decomposition.☆14Jul 13, 2025Updated 7 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- epigenome analysis to rank transcription factors☆33Feb 2, 2023Updated 3 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31May 20, 2025Updated 8 months ago
- R functions underlying OmicsNet☆20Updated this week
- R package for WikiPathways API☆17Nov 3, 2025Updated 3 months ago
- ☆16Sep 21, 2021Updated 4 years ago
- ☆15Aug 25, 2022Updated 3 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- A portable and fast single cell type identifier☆63May 12, 2021Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Jul 5, 2021Updated 4 years ago
- latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary).☆16Nov 18, 2025Updated 2 months ago
- Exon-Intron Split Analysis (EISA) in R☆17Nov 3, 2025Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Dec 2, 2025Updated 2 months ago
- Single-Cell Inference of Class Switch Recombination☆20Updated this week
- ☆18Jul 30, 2022Updated 3 years ago