liulab-dfci / lisa2Links
☆30Updated 2 years ago
Alternatives and similar repositories for lisa2
Users that are interested in lisa2 are comparing it to the libraries listed below
Sorting:
- ☆32Updated 9 months ago
- scWGCNA☆61Updated 2 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Functional Inference of Gene Regulation☆48Updated last year
- ☆39Updated last month
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- ☆51Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆34Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Create cisTarget databases☆53Updated 4 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Single-cell Case Control Analysis☆52Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- R package IReNA☆28Updated 11 months ago
- Mapping pipeline for snmC-seq based technologies.☆21Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- ☆47Updated 9 months ago
- ☆37Updated 7 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year