jaleesr / BITFAMLinks
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research  (2021) https://genome.cshlp.org/content/31/7/1296 for details.
☆31Updated 5 months ago
Alternatives and similar repositories for BITFAM
Users that are interested in BITFAM are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 5 months ago
 - R package for single cell and other data analysis using diffusion maps☆89Updated 11 months ago
 - ☆43Updated 4 months ago
 - Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
 - ☆43Updated 4 years ago
 - Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 5 months ago
 - A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
 - Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
 - Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
 - ☆39Updated 4 years ago
 - Unified access to several second-generation deconvolution methods☆84Updated 3 weeks ago
 - Single-cell Case Control Analysis☆52Updated last week
 - Normalize CITEseq Data☆66Updated 6 months ago
 - scWGCNA☆61Updated 2 years ago
 - ☆29Updated 2 years ago
 - NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
 - SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
 - ☆55Updated 4 years ago
 - Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
 - Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
 - ☆58Updated 2 months ago
 - Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
 - A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
 - R package for robust clustering of single cell RNA sequencing data☆35Updated last year
 - Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
 - ☆41Updated 4 years ago
 - R package for specialised analysis of single cell data☆39Updated 3 years ago
 - psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
 - ConsensusTME Gene Sets and R Script☆39Updated last year
 - ☆32Updated 9 months ago