gtrichard / deepStatsLinks
deepStats: a stastitical toolbox for deeptools and genomic signals
☆35Updated 4 years ago
Alternatives and similar repositories for deepStats
Users that are interested in deepStats are comparing it to the libraries listed below
Sorting:
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆34Updated this week
- A small R package to make sequencing read coverage plots in R.☆39Updated last week
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- a set of NGS pipelines☆24Updated 3 weeks ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 7 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- interactive plots for differential expression analysis☆34Updated 4 months ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 3 weeks ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- ☆33Updated 3 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago