Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles
☆19Sep 19, 2018Updated 7 years ago
Alternatives and similar repositories for MatchedFilter
Users that are interested in MatchedFilter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes to run deltaSVM models to predict allelic TF binding☆10Apr 5, 2021Updated 5 years ago
- STARRPeaker: STARR-seq peak caller☆17Jul 6, 2022Updated 3 years ago
- ☆14May 26, 2020Updated 5 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- ☆13Jul 21, 2021Updated 4 years ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆26Aug 17, 2024Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 3 years ago
- documentation for trackViewer☆29Aug 6, 2019Updated 6 years ago
- ☆18Nov 9, 2020Updated 5 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆21May 3, 2019Updated 6 years ago
- Scripts for stat and plot figures in rice microbiome paper☆20May 12, 2019Updated 6 years ago
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Aug 3, 2017Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆179Mar 19, 2026Updated last month
- ☆18Sep 6, 2022Updated 3 years ago
- ☆17Mar 2, 2019Updated 7 years ago
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 5 years ago
- A modular Hi-C mapping pipeline☆102Dec 5, 2024Updated last year
- ☆53Nov 14, 2023Updated 2 years ago
- ☆12Oct 10, 2024Updated last year
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- ☆21Jun 29, 2021Updated 4 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆36Jan 6, 2025Updated last year
- Predicting regulatory DNA elements based on epigenomic signatures☆30Jun 26, 2024Updated last year
- ☆33Nov 9, 2022Updated 3 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 4 years ago
- A JBrowse plugin for viewing GWAS data☆13Feb 13, 2022Updated 4 years ago
- Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.☆10Feb 22, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- ☆27Apr 18, 2018Updated 8 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆17Jul 23, 2019Updated 6 years ago
- ☆14Jul 1, 2025Updated 9 months ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆16Feb 1, 2021Updated 5 years ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆40Apr 22, 2024Updated 2 years ago