Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles
☆19Sep 19, 2018Updated 7 years ago
Alternatives and similar repositories for MatchedFilter
Users that are interested in MatchedFilter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes to run deltaSVM models to predict allelic TF binding☆11Apr 5, 2021Updated 5 years ago
- STARRPeaker: STARR-seq peak caller☆17Jul 6, 2022Updated 3 years ago
- ☆14May 26, 2020Updated 6 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- ☆13Jul 21, 2021Updated 4 years ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆26Aug 17, 2024Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 3 years ago
- documentation for trackViewer☆29Aug 6, 2019Updated 6 years ago
- ☆18Nov 9, 2020Updated 5 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆21May 3, 2019Updated 7 years ago
- Scripts for stat and plot figures in rice microbiome paper☆20May 12, 2019Updated 7 years ago
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Aug 3, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆181Mar 19, 2026Updated 2 months ago
- ☆18Sep 6, 2022Updated 3 years ago
- ☆17Mar 2, 2019Updated 7 years ago
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 5 years ago
- A modular Hi-C mapping pipeline☆103Dec 5, 2024Updated last year
- ☆12Oct 10, 2024Updated last year
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 5 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- ☆21Jun 29, 2021Updated 4 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆36Jan 6, 2025Updated last year
- Automated Modelling for Biological Evidence-based Research☆49Nov 15, 2023Updated 2 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆30Jun 26, 2024Updated last year
- ☆33Nov 9, 2022Updated 3 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 5 years ago
- A JBrowse plugin for viewing GWAS data☆13Feb 13, 2022Updated 4 years ago
- Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.☆10Feb 22, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆27Apr 18, 2018Updated 8 years ago
- ☆14Jul 1, 2025Updated 11 months ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆41Apr 22, 2024Updated 2 years ago
- TF MOtif Discovery from Importance SCOres☆180May 13, 2026Updated 3 weeks ago
- ☆22Apr 2, 2015Updated 11 years ago