gersteinlab / MatchedFilterLinks
Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles
☆18Updated 6 years ago
Alternatives and similar repositories for MatchedFilter
Users that are interested in MatchedFilter are comparing it to the libraries listed below
Sorting:
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 10 months ago
- ☆21Updated 3 years ago
- ☆30Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆53Updated 3 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆48Updated 3 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 3 weeks ago
- ☆20Updated last year
- Analysis of Paired-Tag datasets☆42Updated last year
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 3 weeks ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- ☆18Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 8 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Clustering motif models to remove redundancy☆42Updated 2 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 4 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆39Updated last year
- ☆88Updated last month
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- ☆35Updated 2 years ago