TrinityCTAT / ctat-mutationsLinks
Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
☆77Updated last year
Alternatives and similar repositories for ctat-mutations
Users that are interested in ctat-mutations are comparing it to the libraries listed below
Sorting:
- ☆72Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆93Updated last month
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆61Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆84Updated 11 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- ☆32Updated 7 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆82Updated 7 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆82Updated 9 months ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- ☆49Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 7 months ago
- Tumor Mutational Burden☆63Updated 5 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago