Alternatives and similar repositories for developing-human-brain:

Users that are interested in developing-human-brain are comparing it to the libraries listed below

• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆29Updated 3 years ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆50Updated 4 months ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆44Updated 11 months ago
• maggiecrow / MetaNeighbor
  ☆49Updated 6 years ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆34Updated last year
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆54Updated 2 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆37Updated 2 years ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆71Updated 3 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆58Updated 4 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆69Updated 6 months ago
• Wei-BioMath / NeuronChat
  ☆32Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆26Updated 2 months ago
• AllenInstitute / BICCN_M1_Evo
  Analysis for BICCN cross-species primary motor cortex project
  ☆22Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆72Updated 5 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / TonsilAtlas
  Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
  ☆28Updated last month
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆46Updated 3 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆40Updated 7 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆52Updated 10 months ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆77Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆47Updated last year
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆60Updated 3 years ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆31Updated 11 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆61Updated 2 years ago
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 8 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 8 months ago