linnarsson-lab / developing-human-brain
☆31Updated 7 months ago
Alternatives and similar repositories for developing-human-brain:
Users that are interested in developing-human-brain are comparing it to the libraries listed below
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Analysis for BICCN cross-species primary motor cortex project☆22Updated last year
- ☆59Updated 5 years ago
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- ☆33Updated last year
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆62Updated 2 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆54Updated 2 years ago
- ☆40Updated 3 years ago
- ☆50Updated 6 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆49Updated 7 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- R implementation of GeneTrajectory☆56Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 6 months ago
- ☆36Updated 6 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆44Updated last year
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- scWGCNA☆58Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 9 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago