linnarsson-lab / developing-human-brain
☆24Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for developing-human-brain
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆41Updated 8 months ago
- ☆47Updated 6 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Cell type pipes for R☆51Updated 9 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆30Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- ☆39Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆34Updated last year
- scWGCNA☆55Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated last month
- ☆29Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- R implementation of GeneTrajectory☆49Updated 7 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆37Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆12Updated last month
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆31Updated 2 years ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆17Updated 4 years ago
- ☆45Updated 7 months ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- ☆29Updated last year
- Single-cell Orientation Tracing☆21Updated 2 years ago