Alternatives and similar repositories for NeuronChat

Users that are interested in NeuronChat are comparing it to the libraries listed below

• linnarsson-lab / developing-human-brain
  ☆36Updated this week
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆75Updated last year
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆81Updated 2 years ago
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆81Updated 3 years ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆56Updated 5 months ago
• xleizi / easySCF
  ☆45Updated last week
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆47Updated last year
• rbpatt2019 / chooseR
  An R framework for choosing clustering parameters in scRNA-seq analysis pipelines
  ☆36Updated 5 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆90Updated 2 months ago
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆136Updated 3 years ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆51Updated last week
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆78Updated 6 months ago
• campbio / decontX
  Methods for decontamination of single cell data
  ☆48Updated 8 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆79Updated 3 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆65Updated 11 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated last year
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆84Updated 2 years ago
• ludvigla / semla
  ☆94Updated last month
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆63Updated 2 years ago
• navinlabcode / CellTrek
  ☆125Updated 3 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆127Updated last year
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• genecell / COSGR
  Accurate and fast cell marker gene identification with COSG
  ☆62Updated 2 years ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆124Updated last week
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆27Updated this week
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆84Updated 2 years ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆33Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆128Updated last year