klarman-cell-observatory / HTAPP-Pipelines
A record of the analysis pipelines used to create the HTAPP data
☆22Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for HTAPP-Pipelines
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆12Updated 7 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 8 months ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- ☆23Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆18Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Network construction Algorithm☆18Updated 2 months ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆18Updated 2 years ago
- ☆15Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆12Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆17Updated last year
- ☆27Updated 3 months ago
- R package of CSOmap(developing☆14Updated 2 years ago
- ☆10Updated last year
- ☆30Updated 7 months ago
- ☆19Updated 6 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- ☆22Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week