klarman-cell-observatory / HTAPP-Pipelines
A record of the analysis pipelines used to create the HTAPP data
☆33Updated 3 weeks ago
Alternatives and similar repositories for HTAPP-Pipelines:
Users that are interested in HTAPP-Pipelines are comparing it to the libraries listed below
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- ☆16Updated last year
- Code used to process the data of the HBCA project☆27Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- ☆16Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆21Updated 3 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆9Updated 10 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆16Updated last month
- ☆20Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- ☆16Updated 11 months ago
- ☆13Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 3 years ago
- ☆18Updated last year
- The codes and files for the study of subsolid nodules (SSN).☆14Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- Computational pipeline to process EasySci-RNA data.☆18Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆14Updated 5 months ago
- ☆22Updated 2 years ago
- ☆17Updated 2 weeks ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 8 months ago
- analysis script for GBM single cell RNA seq data☆18Updated 3 years ago
- ☆9Updated 10 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year