Alternatives and similar repositories for HTAPP-Pipelines

Users that are interested in HTAPP-Pipelines are comparing it to the libraries listed below

• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆20Updated last year
• yunshun / HumanBreast10X
  ☆26Updated 3 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 7 months ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆22Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 9 months ago
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated 9 months ago
• satijalab / azimuth-references
  ☆23Updated last month
• guangchunhan / LUAD_Code
  ☆20Updated last year
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆22Updated 3 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆18Updated 4 years ago
• jyyulab / scMINER
  Single-cell Mutual Information-based Network Engineering Ranger
  ☆17Updated 3 weeks ago
• UPSUTER / GEMLI
  ☆32Updated 5 months ago
• lmassier / hWAT_singlecell
  meta-analysis of new and published human WAT single cell data
  ☆13Updated 3 months ago
• qingnanl / gsdensity
  ☆9Updated 11 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 6 months ago
• soumelis-lab / ICELLNET
  ☆20Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆56Updated last year
• satijalab / Mixscale
  ☆18Updated 2 months ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 6 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year