A record of the analysis pipelines used to create the HTAPP data
☆34Apr 15, 2025Updated last year
Alternatives and similar repositories for HTAPP-Pipelines
Users that are interested in HTAPP-Pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial Transcriptomic Analysis of OSCC samples☆28Dec 24, 2025Updated 8 months ago
- Cloud-based scalable and efficient single-cell genomics workflows☆68Aug 6, 2026Updated 3 weeks ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 4 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆66Dec 7, 2022Updated 3 years ago
- ☆13Jun 18, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Mar 6, 2024Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 5 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆20Aug 24, 2023Updated 3 years ago
- ☆20May 1, 2023Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 6 years ago
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆24Jun 5, 2020Updated 6 years ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- ☆13Jun 18, 2026Updated 2 months ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- ☆18Nov 5, 2024Updated last year
- ☆19Aug 1, 2023Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆66Mar 31, 2022Updated 4 years ago
- ☆114Sep 16, 2020Updated 5 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆23Mar 29, 2023Updated 3 years ago
- Code repository for single cell RNA-seq☆42Oct 12, 2020Updated 5 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- ☆35Aug 25, 2026Updated last week
- Code for EpiMap data browser☆14Jun 4, 2024Updated 2 years ago
- ☆64Jul 6, 2021Updated 5 years ago
- ☆33Feb 26, 2025Updated last year
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆80Oct 29, 2024Updated last year
- codes for article☆19Jan 14, 2026Updated 7 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- ☆37Jan 3, 2025Updated last year
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- ☆10Jun 1, 2026Updated 3 months ago
- ☆34Jan 26, 2022Updated 4 years ago