ccruizm / GBmapLinks
Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.
☆65Updated 3 years ago
Alternatives and similar repositories for GBmap
Users that are interested in GBmap are comparing it to the libraries listed below
Sorting:
- Construct Tumor Transition Zone Microenvironment☆53Updated 7 months ago
- ☆48Updated 3 years ago
- ☆32Updated 11 months ago
- ☆57Updated last year
- ☆33Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- ☆32Updated 3 years ago
- Methods for decontamination of single cell data☆56Updated 11 months ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated this week
- ☆57Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- ☆22Updated 2 years ago
- Codes used in pan-T cell analysis☆65Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 6 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆30Updated last year
- ☆34Updated 2 years ago
- Codes for the scPLC project☆74Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆115Updated 9 months ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- ☆25Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆87Updated 3 years ago
- Single Cell Analysis Operations☆13Updated 2 months ago
- Visualize the results of cell-cell communication analysis☆24Updated 3 years ago
- ☆17Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year