ccruizm / GBmapLinks
Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.
☆56Updated 2 years ago
Alternatives and similar repositories for GBmap
Users that are interested in GBmap are comparing it to the libraries listed below
Sorting:
- ☆43Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆66Updated 8 months ago
- ☆50Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆71Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆44Updated 7 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last month
- Estimation of Single-Cell Potency with Single Cell Entropy☆41Updated 2 years ago
- ☆30Updated 3 months ago
- ☆30Updated 2 years ago
- Methods for decontamination of single cell data☆47Updated 4 months ago
- ☆22Updated last year
- ☆45Updated 3 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆20Updated last year
- Codes used in pan-T cell analysis☆59Updated 2 years ago
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- ☆31Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- ☆27Updated last year
- R package for pathway analysis in scRNA-seq data☆73Updated 10 months ago
- ☆61Updated 5 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Single Cell Analysis Operations☆13Updated 3 months ago
- Accurate and fast cell marker gene identification with COSG☆44Updated 2 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆49Updated 3 years ago
- ☆22Updated 2 months ago