AllenInstitute / cell_type_mapperLinks
Repository for storing prototype functionality implementations for the BKP
☆37Updated last week
Alternatives and similar repositories for cell_type_mapper
Users that are interested in cell_type_mapper are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 2 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 5 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- An R package for performing cell typing in SMI and other single cell data☆43Updated 6 months ago
- ☆41Updated 2 years ago
- ☆36Updated last month
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated 2 months ago
- ☆48Updated 7 years ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- ☆24Updated 2 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 3 months ago
- ☆51Updated 2 weeks ago
- ☆56Updated last year
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- software to detect doublets☆95Updated 11 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆62Updated 3 months ago
- Cytograph version used for adult human-brain analysis☆91Updated 5 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- ☆48Updated last month
- ☆71Updated last year
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆84Updated last week
- Identification of spatial homogeneous regions☆21Updated last month
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- ☆65Updated 2 years ago
- Bring your single-cell data to life☆88Updated 3 weeks ago