AllenInstitute / cell_type_mapperLinks
Repository for storing prototype functionality implementations for the BKP
☆33Updated this week
Alternatives and similar repositories for cell_type_mapper
Users that are interested in cell_type_mapper are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 2 weeks ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated 2 months ago
- An R package for performing cell typing in SMI and other single cell data☆39Updated 3 months ago
- ☆20Updated this week
- ☆40Updated 2 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Spatial analysis of FISH data☆31Updated 3 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated last week
- Identification of spatial homogeneous regions☆21Updated 8 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated 2 weeks ago
- Cytograph version used for adult human-brain analysis☆88Updated 2 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- ☆55Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆43Updated last week
- ☆49Updated 2 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆117Updated 2 weeks ago
- ☆48Updated 7 years ago
- ☆29Updated last year
- software to detect doublets☆94Updated 8 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated 11 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆64Updated last week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated 4 months ago
- ☆19Updated 5 years ago
- ☆45Updated 2 months ago
- ☆44Updated last month
- Direct estimation of mean and covariance from single cell RNA seq experiments☆116Updated 4 months ago