AllenInstitute / cell_type_mapperLinks
Repository for storing prototype functionality implementations for the BKP
☆33Updated this week
Alternatives and similar repositories for cell_type_mapper
Users that are interested in cell_type_mapper are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 2 weeks ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated last month
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- An R package for performing cell typing in SMI and other single cell data☆39Updated 3 months ago
- ☆49Updated 2 months ago
- ☆55Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆64Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆86Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last week
- ☆20Updated this week
- ☆40Updated 2 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated last week
- Cytograph version used for adult human-brain analysis☆87Updated 2 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆114Updated this week
- ☆49Updated 7 years ago
- ☆35Updated last year
- Identification of spatial homogeneous regions☆21Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- ☆45Updated 2 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆40Updated last month
- ☆19Updated 5 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated 3 weeks ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Spatial analysis of FISH data☆31Updated 3 months ago
- trajectory inference☆104Updated 6 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆44Updated 4 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 2 months ago
- .h5mu files interface for Seurat☆32Updated last year