Implementation of hierarchical and correlation mapping algorithms for MapMyCells (https://brain-map.org/bkp/analyze/mapmycells)
☆57Sep 25, 2026Updated last month
Alternatives and similar repositories for cell_type_mapper
Users that are interested in cell_type_mapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆128Oct 21, 2026Updated last week
- CSV file and R package for collecting gene ortholog information from NCBI.☆18Jan 16, 2024Updated 2 years ago
- Cytograph version used for adult human-brain analysis☆103Jun 5, 2026Updated 4 months ago
- ☆46Sep 10, 2026Updated last month
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Jun 15, 2018Updated 8 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆20Feb 23, 2026Updated 8 months ago
- ☆31Updated this week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆22Updated this week
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆14Nov 7, 2024Updated last year
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 9 months ago
- Paulsen, Velasco, Kedaigle, and Pigioni et. al., Nature 2022☆14Oct 26, 2020Updated 6 years ago
- Toolbox of the Human Neural Organoid Cell Atlas☆35Oct 19, 2026Updated last week
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆123Aug 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CELLEX (CELL-type EXpression-specificity)☆45Apr 29, 2026Updated 6 months ago
- Spatial neighbour-aware transcript cleanup for imaging-based spatial transcriptomics data (Xenium, MERSCOPE, CosMx). XeniumClean removes…☆21Jul 19, 2026Updated 3 months ago
- An R package with wrappers and pipelines for single cell RNA-seq analysis☆15Sep 10, 2026Updated last month
- Geo Bio MCP - A Model Context Protocol (MCP) server for accessing GEO (Gene Expression Omnibus) data through NCBI E-Utils API☆18Apr 20, 2026Updated 6 months ago
- ☆26Oct 12, 2026Updated 2 weeks ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Sep 18, 2023Updated 3 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆88Sep 15, 2026Updated last month
- a place to work on a specification for skeletons☆23Sep 14, 2026Updated last month
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- ☆29Apr 1, 2025Updated last year
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- R package for visualising high-dimensional categorical data☆27Dec 11, 2025Updated 10 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Oct 5, 2026Updated 3 weeks ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated last year
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆22Oct 23, 2026Updated last week
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- ☆63Jul 12, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Create cisTarget databases☆65Jun 18, 2025Updated last year
- Methods for detecting doublets in single-cell sequencing data☆276Oct 18, 2026Updated last week
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆23May 28, 2026Updated 5 months ago
- ☆11Oct 15, 2026Updated 2 weeks ago
- ☆20Oct 17, 2024Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆67Sep 22, 2026Updated last month
- Python package for processing and analyzing Illumina DNA methylation data☆12Jul 8, 2026Updated 3 months ago