AllenInstitute / cell_type_mapperLinks
Repository for storing prototype functionality implementations for the BKP
☆35Updated last week
Alternatives and similar repositories for cell_type_mapper
Users that are interested in cell_type_mapper are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated last month
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 3 months ago
- ☆41Updated 2 years ago
- ☆22Updated this week
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated last month
- Cytograph version used for adult human-brain analysis☆91Updated 4 months ago
- ☆48Updated 7 years ago
- ☆36Updated this week
- ☆51Updated last week
- An R package for performing cell typing in SMI and other single cell data☆42Updated 5 months ago
- ☆56Updated last year
- Single-Cell Clustering Assessment Framework☆105Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- trajectory inference☆105Updated 8 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated 3 weeks ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
- iterative clustering pipeline of big single cell datasets.☆34Updated last month
- ☆45Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆66Updated 3 weeks ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆81Updated this week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆80Updated 7 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆133Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- software to detect doublets☆95Updated 9 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated 3 weeks ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- Spatial analysis of FISH data☆32Updated 5 months ago