AllenInstitute / cell_type_mapperLinks
Repository for storing prototype functionality implementations for the BKP
☆38Updated 3 weeks ago
Alternatives and similar repositories for cell_type_mapper
Users that are interested in cell_type_mapper are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Updated 3 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- ☆41Updated 2 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 5 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 3 months ago
- ☆56Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- ☆24Updated last month
- ☆51Updated last week
- ☆36Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆64Updated 2 weeks ago
- Spatial analysis of FISH data☆34Updated 7 months ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆92Updated 3 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated last month
- Identification of spatial homogeneous regions☆21Updated 2 months ago
- ☆48Updated 7 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆36Updated last week
- An R package for performing cell typing in SMI and other single cell data☆44Updated 7 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- ☆48Updated last month
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆82Updated 9 months ago
- trajectory inference☆105Updated 10 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated last month
- ☆19Updated 6 years ago
- ☆25Updated 8 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆69Updated 3 weeks ago