Alternatives and similar repositories for cell_type_mapper:

Users that are interested in cell_type_mapper are comparing it to the libraries listed below

• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆25Updated 4 months ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆62Updated last week
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆33Updated last month
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆25Updated 4 months ago
• Wei-BioMath / NeuronChat
  ☆32Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 2 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆50Updated last month
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆24Updated 3 weeks ago
• pachterlab / LP_2021
  ☆46Updated 10 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆19Updated last month
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆59Updated 4 months ago
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆35Updated 3 weeks ago
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆44Updated 11 months ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆28Updated last week
• AllenInstitute / mfishtools
  Building Gene Sets and Mapping mFISH Data
  ☆16Updated last year
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆23Updated 2 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆36Updated 5 months ago
• xleizi / easySCF
  ☆35Updated 2 months ago
• almaan / eggplant
  ☆20Updated 2 years ago
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆52Updated this week
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆28Updated last year
• maggiecrow / MetaNeighbor
  ☆49Updated 6 years ago
• rajewsky-lab / spacemake
  ☆40Updated last week
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆29Updated 2 weeks ago
• wanglab-broad / CAST
  CAST package
  ☆29Updated 3 months ago
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• linnarsson-lab / developing-human-brain
  ☆30Updated 6 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆47Updated last week