AllenInstitute / cell_type_mapper
Repository for storing prototype functionality implementations for the BKP
☆23Updated this week
Alternatives and similar repositories for cell_type_mapper:
Users that are interested in cell_type_mapper are comparing it to the libraries listed below
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆26Updated 6 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 4 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆66Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆35Updated 3 months ago
- An R package for performing cell typing in SMI and other single cell data☆33Updated 3 months ago
- ☆25Updated 5 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated 2 weeks ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆44Updated last year
- Single cell RNA-seq analysis for transcriptomic type characterization☆36Updated 3 weeks ago
- Identification of spatial homogeneous regions☆20Updated 2 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- ☆33Updated last year
- CAST package☆31Updated 4 months ago
- ☆21Updated 2 years ago
- ☆38Updated 3 months ago
- iterative clustering pipeline of big single cell datasets.☆29Updated last month
- .h5mu files interface for Seurat