grenaud / vganLinks
Suite of tools for pangenomics built using vg
☆24Updated 4 months ago
Alternatives and similar repositories for vgan
Users that are interested in vgan are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Reference bias measuring toolkit☆19Updated 7 months ago
- A Nextflow pipeline for running synteny analysis.☆16Updated 5 months ago
- ☆27Updated 3 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Reference genome quality scores☆21Updated 4 years ago
- Software for ancestry estimation in unrelated individuals☆21Updated this week
- Haplotype and population structure inference using neural networks.☆27Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆12Updated 10 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Transfer coordinates across genomes☆23Updated 6 months ago
- ☆44Updated 8 months ago
- ☆21Updated last year
- Differential k-mer analysis☆38Updated last year
- Tools for merging Tandem Repeat VCF files☆37Updated 7 months ago
- ☆15Updated last year
- ☆20Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Updated 6 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- ☆11Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- Implementation of ToL genome assembly workflows☆24Updated last week