bhofmei / jbplugin-methylationLinks
JBrowse plugin for methylation related things
☆15Updated 6 years ago
Alternatives and similar repositories for jbplugin-methylation
Users that are interested in jbplugin-methylation are comparing it to the libraries listed below
Sorting:
- JBrowse plugin that supports smallRNA alignments☆12Updated 6 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- A JBrowse plugin for viewing GWAS data☆11Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Structural variant caller☆54Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 7 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- ☆29Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆17Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- ☆11Updated 10 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆27Updated 2 months ago
- Transposable element polymorphism identification☆33Updated 4 years ago