fiberseq / FIRE
A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
☆19Updated this week
Alternatives and similar repositories for FIRE:
Users that are interested in FIRE are comparing it to the libraries listed below
- ☆48Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆45Updated 5 months ago
- The Flexible Demultiplexer☆28Updated 2 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 9 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 5 months ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Somatic structural variant caller for long-read data☆60Updated this week
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Error correction of ONT transcript reads☆59Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 11 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 7 months ago
- Human reference genome analysis sets☆51Updated last year
- Methylation Phasing for Nanopore Sequencing☆46Updated 2 years ago
- ☆36Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆29Updated 4 years ago
- ☆21Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- Tip and tricks for BAM files☆84Updated 6 years ago
- ☆59Updated 7 months ago
- Simple pileup-based variant caller☆88Updated 2 weeks ago
- ☆33Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 3 weeks ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated 11 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 5 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month