A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
☆29Nov 12, 2025Updated 4 months ago
Alternatives and similar repositories for FIRE
Users that are interested in FIRE are comparing it to the libraries listed below
Sorting:
- Tools for fiberseq data written in rust.☆64Updated this week
- Call select base modifications in PacBio HiFi reads☆16Mar 4, 2026Updated 2 weeks ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 3 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- Implementation of the Hidden Markov Model☆15May 11, 2019Updated 6 years ago
- ☆10Mar 11, 2025Updated last year
- De novo clustering of long transcript reads into genes☆19Dec 15, 2025Updated 3 months ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Oct 23, 2024Updated last year
- Centromere mapping and annotation pipeline☆23Feb 28, 2026Updated 2 weeks ago
- A battery of methylation tools for PacBio HiFi reads☆49Dec 2, 2025Updated 3 months ago
- ☆20Apr 15, 2024Updated last year
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆14Sep 6, 2023Updated 2 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- A complete diploid human genome☆145Mar 9, 2026Updated last week
- ☆19Mar 31, 2025Updated 11 months ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆16Jan 16, 2023Updated 3 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Jul 2, 2023Updated 2 years ago
- ☆22Jul 27, 2023Updated 2 years ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆14May 18, 2023Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆102Mar 3, 2025Updated last year
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- RStudio addin to paste last value as comment in code☆11May 24, 2021Updated 4 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- edgePython is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data. It also include…☆48Mar 2, 2026Updated 2 weeks ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- ☆12Aug 30, 2024Updated last year
- This project serves as a comprehensive guide to performing football analysis using Python. You can view Live Demo :☆16Apr 14, 2023Updated 2 years ago
- ☆45Updated this week
- A program for assessing the T2T genome continuity☆92Feb 28, 2026Updated 3 weeks ago
- R package for estimating and visualizing multilevel propensity score models.☆16Nov 17, 2025Updated 4 months ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆23Jul 4, 2023Updated 2 years ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- ☆38Oct 6, 2025Updated 5 months ago
- ☆10Jan 18, 2023Updated 3 years ago