PopicLab / insilicoSVView external linksLinks
☆16Nov 28, 2025Updated 2 months ago
Alternatives and similar repositories for insilicoSV
Users that are interested in insilicoSV are comparing it to the libraries listed below
Sorting:
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆19Jan 10, 2026Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆19Jan 21, 2026Updated 3 weeks ago
- ☆27Apr 17, 2025Updated 9 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Python Tape Manager☆14Sep 10, 2025Updated 5 months ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 2 months ago
- ☆13Updated this week
- ☆10Feb 20, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated 11 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Jan 29, 2026Updated 2 weeks ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆30Updated this week
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- ☆15Aug 8, 2025Updated 6 months ago
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 4 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 10 months ago
- ☆16Feb 2, 2026Updated last week
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- JBrowse 1.x Plugin Registry☆14Sep 10, 2023Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆66Updated this week
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 4 months ago
- ☆13Jun 24, 2016Updated 9 years ago
- Scoring GT/AG sites for improving spliced alignment☆50Nov 10, 2025Updated 3 months ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆28Aug 30, 2025Updated 5 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 2, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 4 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Feb 15, 2025Updated 11 months ago
- JBrowse plugin for methylation related things☆16Oct 9, 2018Updated 7 years ago