Alternatives and similar repositories for picovcf

Users that are interested in picovcf are comparing it to the libraries listed below

• gymrek-lab / EnsembleTR
  Tools for merging Tandem Repeat VCF files
  ☆37Updated 8 months ago
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 4 years ago
• Zilong-Li / vcfpp
  a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
  ☆24Updated 5 months ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆34Updated last year
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated 2 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 10 months ago
• DecodeGenetics / popvcf
  Lossless VCF compression
  ☆21Updated 3 years ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 7 months ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆17Updated 3 years ago
• Kuanhao-Chao / OpenSpliceAI
  🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species
  ☆31Updated last month
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 5 years ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆23Updated 6 months ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• bhofmei / bhofmei-jbplugins
  All JBrowse plugins created by Brigitte Hofmeister
  ☆10Updated 7 years ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆24Updated last week
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆28Updated last year
• statgen / savvy
  Interface to various variant calling formats.
  ☆31Updated last year
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 3 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆30Updated 10 months ago
• HurlesGroupSanger / DeNovoWEST
  ☆23Updated last week
• tkzeng / GeneBayes
  ☆31Updated 7 months ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last month
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 2 months ago
• Griffan / FASTQuick
  Ultra Fast NGS Data QC Tool
  ☆28Updated 4 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 2 months ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆40Updated last year
• SowpatiLab / ATaRVa
  ATaRVa - Analysis of Tandem Repeat Variation
  ☆15Updated 3 weeks ago