Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.
☆22Dec 2, 2025Updated 6 months ago
Alternatives and similar repositories for picovcf
Users that are interested in picovcf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago
- Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call …☆20Nov 24, 2025Updated 6 months ago
- Scoring GT/AG sites for improving spliced alignment☆55Nov 10, 2025Updated 7 months ago
- Fast interval intersection library☆44Aug 20, 2025Updated 9 months ago
- ☆30Sep 11, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆25Jun 7, 2026Updated last week
- BioC++ core library (alphabet, meta, ranges)☆21Jul 21, 2023Updated 2 years ago
- QGIS svg icons - Animal silhouettes☆13Nov 17, 2018Updated 7 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆76Nov 4, 2025Updated 7 months ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Notebooks which are dedicated examples for TileDB☆19Jan 27, 2022Updated 4 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- A matrix-like wrapper around PLINK .bed files☆19Sep 6, 2024Updated last year
- Rare Disease variant reanalysis tool☆37Updated this week
- Drawing functions for Demes demographic models☆25Jun 8, 2026Updated last week
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆31Jun 5, 2026Updated last week
- ☆17May 22, 2026Updated 3 weeks ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 3 months ago
- A rust implementation of STAR☆48Updated this week
- Complex structural variant visualization for HiFi sequencing data☆48Oct 24, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 2 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆31May 19, 2026Updated 3 weeks ago
- Automatic trail recursion optimisation☆40Feb 25, 2019Updated 7 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 3 months ago
- ☆24May 9, 2026Updated last month
- Pynocular is a lightweight ORM that lets you query your database using Pydantic models and asyncio☆11May 24, 2022Updated 4 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago