Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.
☆18Dec 2, 2025Updated 3 months ago
Alternatives and similar repositories for picovcf
Users that are interested in picovcf are comparing it to the libraries listed below
Sorting:
- Genotype Representation Graph Library☆41Feb 25, 2026Updated last week
- ☆14Oct 29, 2025Updated 4 months ago
- Scoring GT/AG sites for improving spliced alignment☆51Nov 10, 2025Updated 3 months ago
- Fast interval intersection library☆44Aug 20, 2025Updated 6 months ago
- BioC++ core library (alphabet, meta, ranges)☆22Jul 21, 2023Updated 2 years ago
- Rare Disease variant reanalysis tool☆29Feb 27, 2026Updated last week
- Notebooks which are dedicated examples for TileDB☆19Jan 27, 2022Updated 4 years ago
- A matrix-like wrapper around PLINK .bed files☆19Sep 6, 2024Updated last year
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 7 months ago
- ☆23Mar 7, 2023Updated 2 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆25Updated this week
- ☆28Sep 11, 2025Updated 5 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆70Nov 4, 2025Updated 4 months ago
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- Specification for the GWAS-VCF format (manuscript in preparation)☆26Aug 3, 2021Updated 4 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Feb 27, 2026Updated last week
- Structure for Interfaces (from "Extending R")☆28Jul 26, 2018Updated 7 years ago
- [MIRROR] Emacs support for Snakemake☆35Feb 4, 2025Updated last year
- ☆33Aug 2, 2022Updated 3 years ago
- R package for the United Nations World Population Prospects 2024☆18Jun 24, 2025Updated 8 months ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- QGIS svg icons - Animal silhouettes☆11Nov 17, 2018Updated 7 years ago
- A local-haplotagging-based small and structural variant caller☆95Feb 27, 2026Updated last week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Complex structural variant visualization for HiFi sequencing data☆47Oct 24, 2025Updated 4 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆84Jun 17, 2024Updated last year
- Pynocular is a lightweight ORM that lets you query your database using Pydantic models and asyncio☆12May 24, 2022Updated 3 years ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆10Nov 7, 2024Updated last year
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- Efficient querying of biological databases☆42Oct 27, 2025Updated 4 months ago
- C++ iterator that performs the cartesian product of many containers.☆12Jan 12, 2016Updated 10 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 2 years ago
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆12Feb 15, 2026Updated 2 weeks ago
- various tools to download, convert and process the full text of scientific articles☆10Apr 2, 2024Updated last year
- ☆13Jul 28, 2025Updated 7 months ago
- ☆12Mar 11, 2025Updated 11 months ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆14Feb 5, 2026Updated last month