Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.
☆23Aug 27, 2026Updated last week
Alternatives and similar repositories for picovcf
Users that are interested in picovcf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genotype Representation Graph Library☆50Aug 27, 2026Updated last week
- ☆20May 8, 2026Updated 3 months ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆20Aug 10, 2026Updated 3 weeks ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- ARG-based inference of selection using deep learning☆18Aug 31, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆26Jun 7, 2026Updated 2 months ago
- Blazingly fast, streaming duplicate detection for NGS data☆21Aug 24, 2026Updated last week
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 5 months ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Fast interval intersection library☆46Jul 14, 2026Updated last month
- Bioinformatics with R cookbook☆14Apr 3, 2019Updated 7 years ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 11 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- ☆29Aug 15, 2026Updated 2 weeks ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆109Jun 25, 2026Updated 2 months ago
- ☆27Nov 14, 2025Updated 9 months ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 6 months ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignme…☆12Aug 12, 2026Updated 3 weeks ago
- Complex structural variant visualization for HiFi sequencing data☆51Aug 6, 2026Updated 3 weeks ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ANI based satellite annotation☆29Aug 6, 2026Updated 3 weeks ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Predict the Race of a Given Surname Using Census Data☆13Jul 5, 2023Updated 3 years ago
- (Ready) Yet Another bioinformatics workflow engine https://traitome.github.io/oxo-flow/latest/☆17Updated this week
- Scoring GT/AG sites for improving spliced alignment☆58Nov 10, 2025Updated 9 months ago
- Repository to ZIP Plink2 LD files and have random access☆17Aug 12, 2026Updated 3 weeks ago
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 6 years ago
- Enumerating bubbles in pangenome graphs☆16Aug 26, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆20Nov 17, 2025Updated 9 months ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Population Genomics in R workshop☆13Mar 24, 2024Updated 2 years ago
- QGIS svg icons - Animal silhouettes☆14Nov 17, 2018Updated 7 years ago
- Read genomic data files (VCF, BCF, BGEN, PGEN, BED, H5AD, HDF5, DelayedArray) into R/Rcpp in chunks☆17Aug 20, 2026Updated 2 weeks ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago